Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0465.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.5  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 158 YYHQTFPYHQGRRHYHTKA*HLVHELPLVHSPH 60
           + H T P+H    H H    H  H  PL HS +
Sbjct: 425 HIHAT-PHHH---HSHAATPHHQHSTPLAHSSY 453


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  NNVGKSI**CAANEQAAVHVPSVKL 106
           N V K I  C+A   A +H+ S KL
Sbjct: 95  NEVNKLITECSAISDADIHLKSSKL 119


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 177 IVVVLSGSMEPAFHRGDLLF 236
           IV  +SGS  P FH+   L+
Sbjct: 390 IVPPISGSATPVFHQEMALY 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,469
Number of Sequences: 438
Number of extensions: 2107
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)