Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6YPK4 Cluster: Cytochrome c oxidase; n=3; Neoptera|Rep...    74   3e-12
UniRef50_Q9VMS1 Cluster: CG14028-PA; n=6; Diptera|Rep: CG14028-P...    62   1e-08
UniRef50_P09669 Cluster: Cytochrome c oxidase polypeptide VIc pr...    58   1e-07
UniRef50_Q4PM34 Cluster: Cytochrome c oxidase subunit VIc; n=1; ...    57   3e-07
UniRef50_P04038 Cluster: Cytochrome c oxidase polypeptide VIc; n...    55   1e-06
UniRef50_UPI00015548E5 Cluster: PREDICTED: similar to cytochrome...    52   1e-05
UniRef50_UPI0000587B5E Cluster: PREDICTED: similar to cytochrome...    51   2e-05
UniRef50_Q8T970 Cluster: AT20031p; n=2; Sophophora|Rep: AT20031p...    47   5e-04
UniRef50_UPI00004477A4 Cluster: PREDICTED: hypothetical protein;...    46   6e-04
UniRef50_Q7PRJ0 Cluster: ENSANGP00000016123; n=2; Culicidae|Rep:...    33   7.9  

>UniRef50_A6YPK4 Cluster: Cytochrome c oxidase; n=3; Neoptera|Rep:
           Cytochrome c oxidase - Triatoma infestans (Assassin bug)
          Length = 76

 Score = 73.7 bits (173), Expect = 3e-12
 Identities = 32/55 (58%), Positives = 43/55 (78%)
 Frame = -1

Query: 249 IKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           IKRN+I+ L LS  +GF FK  IG+ RK++YAEFY+ YDAE++F+ M+  GLFQS
Sbjct: 21  IKRNLIIGLVLSISSGFLFKTFIGDARKKQYAEFYKNYDAEEDFKRMKSLGLFQS 75


>UniRef50_Q9VMS1 Cluster: CG14028-PA; n=6; Diptera|Rep: CG14028-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 77

 Score = 62.1 bits (144), Expect = 1e-08
 Identities = 27/56 (48%), Positives = 36/56 (64%)
 Frame = -1

Query: 249 IKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 82
           IKRN+ V+L L+ V    +K L+ + +K  YA+FY  YDA K FE M+  G FQSC
Sbjct: 22  IKRNLAVSLGLTAVVTIAYKILVNDPKKAAYADFYSKYDANKSFERMKAAGRFQSC 77


>UniRef50_P09669 Cluster: Cytochrome c oxidase polypeptide VIc
           precursor; n=36; Euteleostomi|Rep: Cytochrome c oxidase
           polypeptide VIc precursor - Homo sapiens (Human)
          Length = 75

 Score = 58.4 bits (135), Expect = 1e-07
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 249 IKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMRK G+FQS
Sbjct: 19  LRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMRKAGIFQS 73


>UniRef50_Q4PM34 Cluster: Cytochrome c oxidase subunit VIc; n=1;
           Ixodes scapularis|Rep: Cytochrome c oxidase subunit VIc
           - Ixodes scapularis (Black-legged tick) (Deer tick)
          Length = 76

 Score = 57.2 bits (132), Expect = 3e-07
 Identities = 25/55 (45%), Positives = 38/55 (69%)
 Frame = -1

Query: 249 IKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           I++++I+ L+L+GV G  +   +   RK+ YA+FY+TYDA  + E M K GLFQS
Sbjct: 16  IRKHLIICLSLAGVGGVAWHYGVCEARKKAYADFYKTYDAAADNERMTKLGLFQS 70


>UniRef50_P04038 Cluster: Cytochrome c oxidase polypeptide VIc; n=5;
           Bos taurus|Rep: Cytochrome c oxidase polypeptide VIc -
           Bos taurus (Bovine)
          Length = 73

 Score = 55.2 bits (127), Expect = 1e-06
 Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 249 IKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ +I+ A  +S G A F +K  +  +RK+ YA+FYR YD+ K+FEEMRK G+FQS
Sbjct: 17  LRFHIVGAFMVSLGFATF-YKFAVAEKRKKAYADFYRNYDSMKDFEEMRKAGIFQS 71


>UniRef50_UPI00015548E5 Cluster: PREDICTED: similar to cytochrome c
           oxidase subunit VIc; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to cytochrome c oxidase subunit VIc -
           Ornithorhynchus anatinus
          Length = 138

 Score = 52.0 bits (119), Expect = 1e-05
 Identities = 23/55 (41%), Positives = 36/55 (65%)
 Frame = -1

Query: 249 IKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ +I+ A  +S      +K  +   RK+ YA+FYR YD+ K+FE+MRK G+FQS
Sbjct: 80  LRFHIVGAFTVSMGLAALYKFGVAEPRKKAYADFYRNYDSMKDFEDMRKAGIFQS 134


>UniRef50_UPI0000587B5E Cluster: PREDICTED: similar to cytochrome c
           oxidase subunit VIc; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to cytochrome c
           oxidase subunit VIc - Strongylocentrotus purpuratus
          Length = 80

 Score = 51.2 bits (117), Expect = 2e-05
 Identities = 23/55 (41%), Positives = 34/55 (61%)
 Frame = -1

Query: 249 IKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           + R+ I+   LS       K  + + RK+ Y EFY+TYDA+ +FE MR+ G+FQS
Sbjct: 17  LTRHFIIGSVLSLAGAGLVKVFLYDARKKLYTEFYKTYDAQADFERMRELGVFQS 71


>UniRef50_Q8T970 Cluster: AT20031p; n=2; Sophophora|Rep: AT20031p -
           Drosophila melanogaster (Fruit fly)
          Length = 87

 Score = 46.8 bits (106), Expect = 5e-04
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = -1

Query: 243 RNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQSC 82
           RN+ +A  L+ +A   F  L  N RKRKY  FY TYD    F+ M   G   SC
Sbjct: 20  RNVKMACTLALLAPLLFYTLHNNPRKRKYRNFYSTYDPMDAFDRMMSGGYLSSC 73


>UniRef50_UPI00004477A4 Cluster: PREDICTED: hypothetical protein;
           n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 102

 Score = 46.4 bits (105), Expect = 6e-04
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
 Frame = -1

Query: 312 GWRKCSIDSEQASDARSPQPVIKR--------NIIVALALSGVAGFTFKQLIGNERKRKY 157
           G R  S ++   S A  P+P ++R        ++  A  +S      +K  +   RKR Y
Sbjct: 15  GQRAWSGNTVSMSSALLPKPQMRRLLARRMKFHLFGAFLVSLGCAALYKFGVAEPRKRAY 74

Query: 156 AEFYRTYDAEKEFEEMRKKGLFQS 85
           AEFY+ YD  K+FE MR  G+F+S
Sbjct: 75  AEFYKNYDPMKDFEAMRAAGVFES 98


>UniRef50_Q7PRJ0 Cluster: ENSANGP00000016123; n=2; Culicidae|Rep:
           ENSANGP00000016123 - Anopheles gambiae str. PEST
          Length = 766

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 348 CIFNFSKIIIRHGWRKCSIDSEQ-ASDARSPQPVIKRNIIVALALSGVAGFTF 193
           C+ +F K + R+ +  C+I  +   S A+    ++ RN++  +AL  V GF F
Sbjct: 620 CLESFLKFLNRNAYIMCAIYGKNFCSSAKDAFSLLTRNVLRVIALDKVTGFLF 672


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,015,035
Number of Sequences: 1657284
Number of extensions: 11946136
Number of successful extensions: 29476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29466
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)