Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    29   0.76 
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     27   3.1  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.1  
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    26   4.1  
SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit L8|S...    26   4.1  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    25   9.4  

>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 309 WRKCSIDSEQASDARSPQPVIKRNIIVALALSGVAGFTFKQLIGNER 169
           W  C  D +  +     + V  R IIV  A   VA FTF+QL G  +
Sbjct: 293 WFLCYADEKDPAHQDEVE-VFGRKIIVPKASGNVAWFTFEQLCGEPK 338


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 171 RKRKYAEFYRTYDAEKE-FEEMRKK 100
           RK  Y ++Y T+D  KE F+E++K+
Sbjct: 375 RKLGYTDYYDTFDGFKETFDELKKQ 399


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 339 NFSKIIIRHGWRKCSIDSEQASDA 268
           N SK +I++GW + S++SE  SDA
Sbjct: 472 NKSKYLIKNGWFEDSLNSEIWSDA 495


>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 292 DTALSPAMSNYNFTEIKNAAAANS 363
           DT+  P++  +N T+IK  + ANS
Sbjct: 165 DTSAEPSLDAFNSTQIKAGSTANS 188


>SPBC1271.13 |mrpl8||mitochondrial ribosomal protein subunit
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 207

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -1

Query: 255 PVIKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKG 97
           P+ ++NI   L         F QL+  E++ ++A     ++ EK  ++  K+G
Sbjct: 146 PITRKNIHKVLLFRKNGKAEFDQLVQKEKESEHARLKEDHEDEKTVKKDWKRG 198


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 97  SIPILLNMNYHSVVLLLFCCE*CY 26
           S+ +    +YHS +  + CC  CY
Sbjct: 447 SLLVQYTKDYHSEIAQMLCCSLCY 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,557
Number of Sequences: 5004
Number of extensions: 47648
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)