Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0025 + 203476-203655,205006-205233,205317-206000                 31   0.79 
01_01_0698 - 5400401-5401015                                           28   5.6  
06_01_0866 + 6582131-6583294                                           27   9.7  

>12_01_0025 + 203476-203655,205006-205233,205317-206000
          Length = 363

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +1

Query: 181 NELLEGKTSDARESQSNNNVTFDDGLRRP-RI*GLLAVDTALSP 309
           N++L   T+D R SQSN++   D  L+ P  + GL+A   +L P
Sbjct: 74  NQVLLAATTDCRSSQSNSSSATDHQLQWPLHVYGLVATRDSLDP 117


>01_01_0698 - 5400401-5401015
          Length = 204

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 455 WV-GMWNSAXGASSHRRYRQHGSSGWRSPSGREFAAA 348
           WV G+  +A  A + RR R HG +GW + +  E  AA
Sbjct: 111 WVCGLCAAAASAEADRRCR-HGGTGWTTATAEEALAA 146


>06_01_0866 + 6582131-6583294
          Length = 387

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 440 NSAXGASSHRRYRQHGSSGWRSPSGREFAAAA 345
           N A G+S HR+++ HG  G       E  +A+
Sbjct: 354 NGAQGSSQHRQHQHHGGGGGGGDERHESMSAS 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,148
Number of Sequences: 37544
Number of extensions: 351753
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)