Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)                   44   1e-04
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_51698| Best HMM Match : COX6C (HMM E-Value=1e-07)
          Length = 187

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = -1

Query: 249 IKRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 109
           +K++I+ A     VAG  +K L  +  K+KYA+FY+ YDAEK  +EM
Sbjct: 134 LKKDILHASIAGIVAGCAWKFLYADPLKKKYADFYKNYDAEKVAKEM 180


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +1

Query: 166 LALITNELLEGKTSDARESQSNNNVTF---DDGLR 261
           L+ + NEL E    + +E Q NNNVTF   D+GLR
Sbjct: 94  LSRLVNELFE----EVQEKQINNNVTFGPLDEGLR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,999,783
Number of Sequences: 59808
Number of extensions: 369983
Number of successful extensions: 885
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)