Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13238-1|CAA31624.1|   75|Homo sapiens cytochrome c oxidase subu...    58   2e-08
BT007007-1|AAP35653.1|   75|Homo sapiens cytochrome c oxidase su...    58   2e-08
BC000187-1|AAH00187.1|   75|Homo sapiens cytochrome c oxidase su...    58   2e-08
AF067637-1|AAC73061.1|   75|Homo sapiens cytochrome c oxidase su...    58   2e-08

>X13238-1|CAA31624.1|   75|Homo sapiens cytochrome c oxidase subunit
           VIc preprotein protein.
          Length = 75

 Score = 58.4 bits (135), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 249 IKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMRK G+FQS
Sbjct: 19  LRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMRKAGIFQS 73


>BT007007-1|AAP35653.1|   75|Homo sapiens cytochrome c oxidase
           subunit VIc protein.
          Length = 75

 Score = 58.4 bits (135), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 249 IKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMRK G+FQS
Sbjct: 19  LRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMRKAGIFQS 73


>BC000187-1|AAH00187.1|   75|Homo sapiens cytochrome c oxidase
           subunit VIc protein.
          Length = 75

 Score = 58.4 bits (135), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 249 IKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMRK G+FQS
Sbjct: 19  LRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMRKAGIFQS 73


>AF067637-1|AAC73061.1|   75|Homo sapiens cytochrome c oxidase
           subunit VIc protein.
          Length = 75

 Score = 58.4 bits (135), Expect = 2e-08
 Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = -1

Query: 249 IKRNIIVALALS-GVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGLFQS 85
           ++ ++ VA  LS GVA   +K  + ++RK+ YA+FYR YD  K+FEEMRK G+FQS
Sbjct: 19  LRNHMAVAFVLSLGVAAL-YKFRVADQRKKAYADFYRNYDVMKDFEEMRKAGIFQS 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,174,634
Number of Sequences: 237096
Number of extensions: 1807908
Number of successful extensions: 3045
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3045
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)