Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical p...    34   0.100
AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical ...    33   0.17 
U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z73102-18|CAI91178.1|   90|Caenorhabditis elegans Hypothetical
           protein B0035.18 protein.
          Length = 90

 Score = 33.9 bits (74), Expect = 0.100
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 246 KRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKGLFQSC 82
           KR I V+LA++ V+   F       R  KY EF+  YD+    +E+    KG   +C
Sbjct: 16  KRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDSYTRMKEICSANKGYMHTC 72


>AL132904-2|CAC35833.1|   86|Caenorhabditis elegans Hypothetical
           protein Y111B2A.2 protein.
          Length = 86

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -1

Query: 246 KRNIIVALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM--RKKGLFQSC 82
           KR I V+LA++ V+   F       R  KY EF+  YD     +E+    KG   +C
Sbjct: 12  KRGIYVSLAVAVVSTAAFNAFYVWPRHNKYEEFFANYDPYTRMKEICAANKGYMHTC 68


>U14635-7|AAC46658.2|  521|Caenorhabditis elegans Hypothetical
           protein C27H5.4a protein.
          Length = 521

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 521 VFKGPMFPE*FNLIWFPHSGTFVWI 595
           ++ GP+F   F L WFP S +  W+
Sbjct: 88  LYAGPVFAASFLLFWFPWSTSIGWV 112


>U14635-6|AAP86617.1|  517|Caenorhabditis elegans Hypothetical
           protein C27H5.4b protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 521 VFKGPMFPE*FNLIWFPHSGTFVWI 595
           ++ GP+F   F L WFP S +  W+
Sbjct: 84  LYAGPVFAASFLLFWFPWSTSIGWV 108


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 103 EGSIPILLNMNYHSVVLLLFCCE*CYNLNKKLEG 2
           + S P+     Y S+ +L FCC     ++K L+G
Sbjct: 743 QNSCPLGFQCTYSSIRMLYFCCRDIVRIDKCLQG 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,979,081
Number of Sequences: 27780
Number of extensions: 273090
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)