Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0463.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    29   2.7  
At4g31460.1 68417.m04470 ribosomal protein L28 family protein ri...    28   4.7  
At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containi...    28   6.1  
At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containi...    27   8.1  
At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) / po...    27   8.1  

>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 204 GFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKKGL 94
           GF F   +GN     Y    +T DA K F+EM ++ +
Sbjct: 143 GFDFDVYVGNNLIHLYGTCKKTSDARKVFDEMTERNV 179


>At4g31460.1 68417.m04470 ribosomal protein L28 family protein
           ribosomal protein YmL14 precursor, mitochondrial -
           Saccharomyces cerevisiae,PIR2:S50921
          Length = 212

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 640 FEGRFSTHSNGIRKADPNKSSRMWKPN 560
           + GR   + N + +   NKS R WKPN
Sbjct: 48  YAGRHIQYGNRVSEDGGNKSRRCWKPN 74


>At5g16860.1 68418.m01975 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 850

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -1

Query: 228 ALALSGVAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEM 109
           A ALS V GF     +GN     Y+      DA K F+EM
Sbjct: 149 AHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188


>At4g30700.1 68417.m04351 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 792

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 210 VAGFTFKQLIGNERKRKYAEFYRTYDAEKEFEEMRKK 100
           V G   + L+G+   + Y +F+R  DA K F+ M +K
Sbjct: 147 VDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183


>At3g02850.1 68416.m00277 stelar K+ outward rectifier (SKOR) /
           potassium channel protein identical to SKOR [Arabidopsis
           thaliana] gi|3810676|emb|CAA11280; member of the 1 pore,
           6 transmembrane (1P/6TM) Shaker K+ channel family,
           PMID:11500563
          Length = 828

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 175 ITNELLEGKTSDARESQSNNNVTF 246
           I N LLEGK S+ R  Q  +++TF
Sbjct: 516 ILNNLLEGKESNVRIKQLESDITF 539


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,208,504
Number of Sequences: 28952
Number of extensions: 258096
Number of successful extensions: 708
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)