Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0462.Seq
(698 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 138 2e-31
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 130 4e-29
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 117 3e-25
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 107 3e-22
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 107 3e-22
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 104 2e-21
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 102 7e-21
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 102 1e-20
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 99 9e-20
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 93 8e-18
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 91 2e-17
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 87 5e-16
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 81 2e-14
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 79 8e-14
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 75 1e-12
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 72 2e-11
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 68 2e-10
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 62 1e-08
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 50 4e-05
UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1; Methan... 41 0.025
UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2; Euryar... 39 0.10
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 38 0.18
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 38 0.31
UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2; Halorubrum... 37 0.41
UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4; Haloba... 35 1.7
UniRef50_UPI00006CB684 Cluster: hypothetical protein TTHERM_0044... 34 2.9
UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2; ... 34 2.9
UniRef50_Q1JT13 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 34 2.9
UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1; Metallosph... 33 5.1
UniRef50_Q8BJM3 Cluster: Growth inhibition and differentiation-r... 33 5.1
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 6.7
UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2; Thermoprot... 33 6.7
UniRef50_Q58QC3 Cluster: Nephrin; n=3; Euteleostomi|Rep: Nephrin... 33 8.9
UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular org... 33 8.9
UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiell... 33 8.9
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 138 bits (333), Expect = 2e-31
Identities = 61/83 (73%), Positives = 74/83 (89%)
Frame = -1
Query: 503 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 324
NFHGM LTTDKLR MVKKWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH
Sbjct: 102 NFHGMALTTDKLRSMVKKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQH 161
Query: 323 TQVRAIRKKMCEIITRDVTNSEL 255
+Q++ IR KM II R++T+++L
Sbjct: 162 SQIKNIRAKMTAIIKREITSTDL 184
Score = 97.1 bits (231), Expect = 4e-19
Identities = 50/83 (60%), Positives = 57/83 (68%), Gaps = 6/83 (7%)
Frame = -3
Query: 249 VVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXG 70
VV KL+PDSIAKDIEKAC +YPL DV IRKVKVLK+PRF++S LMELH
Sbjct: 187 VVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVS 246
Query: 69 DKS------ERPEGYEPPVQESV 19
+ +RPEGYEPPVQ SV
Sbjct: 247 TGAASGVVVDRPEGYEPPVQASV 269
Score = 37.5 bits (83), Expect = 0.31
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = -2
Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
+ DAERSFRKF+L+AE V GR+V
Sbjct: 77 EPDAERSFRKFKLVAESVNGRDV 99
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 130 bits (313), Expect = 4e-29
Identities = 58/86 (67%), Positives = 71/86 (82%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ NFHGMDLT DK+ MVKKWQT+IEA++DVKTTDGY+LR+FC+GFT K + RKT Y
Sbjct: 96 CLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSY 155
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
AQH QVR IRKKM EI+TR+V ++L
Sbjct: 156 AQHQQVRQIRKKMMEIMTREVQTNDL 181
Score = 107 bits (256), Expect = 3e-22
Identities = 54/83 (65%), Positives = 61/83 (73%), Gaps = 4/83 (4%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+EVVNKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH
Sbjct: 182 KEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKA 241
Query: 75 XGD----KSERPEGYEPPVQESV 19
GD K ER +GYEPPVQESV
Sbjct: 242 TGDETGAKVERADGYEPPVQESV 264
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 117 bits (281), Expect = 3e-25
Identities = 61/123 (49%), Positives = 81/123 (65%)
Frame = -1
Query: 623 REEVFRKFPLADLQA*H*RGKVFPQIQINRRICART*CVCNFHGMDLTTDKLRWMVKKWQ 444
+ VF + LADLQA + + +I++ + NF GMD TTDKLR +V+KWQ
Sbjct: 457 KHRVF-EISLADLQADE--DQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQ 513
Query: 443 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 264
TLIEA++DVKTTD Y LR+FCI FT K +KTCYAQ +Q+R IR+KM EI+T T+
Sbjct: 514 TLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATS 573
Query: 263 SEL 255
+L
Sbjct: 574 CDL 576
Score = 71.3 bits (167), Expect = 2e-11
Identities = 39/79 (49%), Positives = 52/79 (65%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+E+V K IP+SI ++IEKA IYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 577 KELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVH---GDYSED 633
Query: 75 XGDKSERPEGYEPPVQESV 19
G K ERP + PV E V
Sbjct: 634 VGTKLERPA--DEPVAEGV 650
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 107 bits (257), Expect = 3e-22
Identities = 47/86 (54%), Positives = 66/86 (76%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ FHG+ LTTDKLR +VKKW TLIE ++DVKTTDG+++R+FCIGFT++ S +KT Y
Sbjct: 98 CLMIFHGLKLTTDKLRSIVKKWCTLIETSVDVKTTDGHLIRIFCIGFTSRKSNQIKKTSY 157
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
A+ Q++ IRK M +IT++ + EL
Sbjct: 158 AKSAQIKKIRKIMNNLITKEAASREL 183
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 107 bits (257), Expect = 3e-22
Identities = 51/103 (49%), Positives = 73/103 (70%)
Frame = -1
Query: 563 KVFPQIQINRRICART*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 384
+VF +I++ + NF+GMDLT+DKLR ++ KW TLIE +DVKTTDGY LRVF
Sbjct: 78 QVFRKIKLRAEEVEGRNVLTNFYGMDLTSDKLRSLIHKWSTLIECFVDVKTTDGYFLRVF 137
Query: 383 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 255
I FT K ++KT YA+ ++V+AIRKKM +I+T V++++L
Sbjct: 138 AICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDL 180
Score = 38.7 bits (86), Expect = 0.14
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = -3
Query: 225 SIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
++A+ I I+P+ +V IRKVKVLK P+ + +KL EL+
Sbjct: 205 TLAEKIRIEGSSIFPIHNVFIRKVKVLKTPKVDAAKLSELY 245
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 104 bits (250), Expect = 2e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ NFHG+D T+DKLR +V+KWQ+LIEAN+ VKTTD Y+LR+F I T + +KT Y
Sbjct: 96 CLTNFHGLDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAVTKRRPNQIKKTTY 155
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
A +Q+RAIR+KM EII R+ + L
Sbjct: 156 AASSQIRAIRRKMTEIIQREASTCTL 181
Score = 66.1 bits (154), Expect = 8e-10
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+++ NKLIP+ I ++IEKA GIYPL++V IRKVK+LK+P+F++ L+ LH
Sbjct: 182 QQLTNKLIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQPKFDLGGLLALH 232
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 102 bits (245), Expect = 7e-21
Identities = 52/83 (62%), Positives = 60/83 (72%), Gaps = 4/83 (4%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+EVVNKLIPDSI KD+EKAC IYPL DV +RKVK+LK+P+FE+ KLMELH
Sbjct: 129 KEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGCSSGKA 188
Query: 75 XGD----KSERPEGYEPPVQESV 19
GD K ER +GYE PVQESV
Sbjct: 189 TGDETGVKVERADGYELPVQESV 211
Score = 33.5 bits (73), Expect = 5.1
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTD 405
C+ NFHG+DLT+DK+ ++K I +V+T D
Sbjct: 93 CLTNFHGVDLTSDKITSQIRKKMMEIMTR-EVQTND 127
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 102 bits (244), Expect = 1e-20
Identities = 52/79 (65%), Positives = 57/79 (72%), Gaps = 4/79 (5%)
Frame = -3
Query: 243 NKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD- 67
NKLIPDSI KDIEKAC IYPL DV +RKVK+LK+P+FE+ KLMELH GD
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGDSSSSGKAIGDE 60
Query: 66 ---KSERPEGYEPPVQESV 19
K ER EGYEPPVQESV
Sbjct: 61 TGAKVERAEGYEPPVQESV 79
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 99.1 bits (236), Expect = 9e-20
Identities = 45/86 (52%), Positives = 60/86 (69%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ NFHGMDLT DKL MV KWQ+ IEA++DVKTTDGY LR F I FT K Q+ Y
Sbjct: 22 CLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVKTTDGYTLRFFVIAFTKKQE-DQKSHAY 80
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
AQ T+++ +R ++ E++ R+V +L
Sbjct: 81 AQTTRIKKLRAEIVEVVQREVARCDL 106
Score = 66.9 bits (156), Expect = 4e-10
Identities = 33/79 (41%), Positives = 48/79 (60%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+ VV KLIPDSI +D I+PL +RKVKVLK+P+ ++ +++ELH
Sbjct: 107 KSVVQKLIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKPKLDLGRILELH--SEGKADE 164
Query: 75 XGDKSERPEGYEPPVQESV 19
G+ RP+ YEPPV ++V
Sbjct: 165 FGEGVPRPDHYEPPVVDAV 183
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 92.7 bits (220), Expect = 8e-18
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Frame = -1
Query: 503 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSL---SQRKTCY 333
+F+G+D+T D+L M++KWQTLIEA +D KT DGY++RVF + FT K S S TCY
Sbjct: 102 SFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCY 161
Query: 332 AQHTQVRAIRKKMCEIITRD 273
A+ +QVRAIR+K+ IT +
Sbjct: 162 AKSSQVRAIRRKINTFITNE 181
Score = 50.4 bits (115), Expect = 4e-05
Identities = 23/50 (46%), Positives = 33/50 (66%)
Frame = -3
Query: 252 EVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
E LI + K IEK I+PL+++ IRKVKVLKRP+ + +K+ EL+
Sbjct: 189 EFSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRPKLDATKIAELY 238
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 91.5 bits (217), Expect = 2e-17
Identities = 40/88 (45%), Positives = 60/88 (68%)
Frame = -1
Query: 518 T*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 339
T C +F+G+D T DK+ M+KK QTLIE ++ ++ DGY+LR+F I FT QRKT
Sbjct: 93 TRCRTSFYGLDSTKDKIFGMIKKRQTLIETQVEARSQDGYILRIFVIAFTKSIKNQQRKT 152
Query: 338 CYAQHTQVRAIRKKMCEIITRDVTNSEL 255
YAQ +Q++ IRKK+ EI+ ++V+ +
Sbjct: 153 TYAQRSQIKDIRKKIVEIVLKEVSKKSI 180
Score = 46.8 bits (106), Expect = 5e-04
Identities = 19/42 (45%), Positives = 32/42 (76%)
Frame = -3
Query: 228 DSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+S+AK+I KA I+PL+++ +RKVK++KRP+ + KL E +
Sbjct: 190 ESLAKEIGKATRTIFPLQNITLRKVKLVKRPKVDAQKLREFY 231
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 86.6 bits (205), Expect = 5e-16
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+EV+NKL+PD++ KD+EKAC IYPL DV +RKVK+L++P+ ++ KL ELH
Sbjct: 165 KEVLNKLVPDNVGKDVEKACQFIYPLHDVFVRKVKILQKPKLDLGKLPELHALGLHGSHR 224
Query: 75 XGDKSERPEGYEPPVQESV 19
KS+R YEPPVQESV
Sbjct: 225 ---KSDR---YEPPVQESV 237
Score = 57.6 bits (133), Expect = 3e-07
Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = -1
Query: 503 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGF-TNKDSLSQRKTCYAQ 327
N +GMDLT DK V KWQ ++EA+ DVKT D Y+L +FC+G+ TN + R+ AQ
Sbjct: 84 NSYGMDLTWDKRCNKVIKWQ-MVEAHADVKTADYYLLCLFCVGYTTNVTTRYARQLVCAQ 142
Query: 326 HTQVRAI 306
+ QV I
Sbjct: 143 YQQVHQI 149
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 81.4 bits (192), Expect = 2e-14
Identities = 37/86 (43%), Positives = 55/86 (63%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
CV F GM+LT+DK + M+KKW TLIEA D+ DG V RVF +G T + +KTCY
Sbjct: 48 CVGFFDGMELTSDKHKAMIKKWHTLIEAQKDIVAKDGSVFRVFVMGVTRRHPGYVKKTCY 107
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
+H+ + IRK M ++I +++ ++
Sbjct: 108 VKHSDEKKIRKIMFDVIEEELSGCDV 133
Score = 36.7 bits (81), Expect = 0.55
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLK 142
++++ KL +++ K IE+ I+PL++ C+RKVK +K
Sbjct: 134 QKIMKKLANETVGKRIEELGSEIFPLQNCCVRKVKTIK 171
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 79.4 bits (187), Expect = 8e-14
Identities = 34/86 (39%), Positives = 54/86 (62%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C FHG+ LT DK+ ++KKW TLIE ++ KT DGY L++F I + K + KT Y
Sbjct: 92 CFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKTKDGYFLKLFLIAQSKKPKNMKSKTVY 151
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
+Q RA+R+++ +II ++ N ++
Sbjct: 152 INSSQKRALRRRITDIIIKEGINMDI 177
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 75.4 bits (177), Expect = 1e-12
Identities = 29/82 (35%), Positives = 54/82 (65%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 321
FH M++TTDK+ +++KW T +E ++VKT DGY +R+F + FT + Q + CYA+
Sbjct: 103 FHSMEVTTDKMANLLRKWCTTMETTVEVKTADGYTMRLFVVAFTKPQANQQSRNCYAKQR 162
Query: 320 QVRAIRKKMCEIITRDVTNSEL 255
V+ +R ++ ++I R ++ ++
Sbjct: 163 LVKWLRMRITKMIKRRLSKVQI 184
Score = 41.1 bits (92), Expect = 0.025
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+E V+ L + ++ + + C+ I PLR++ IRKV+V++ P+F+ L+ H
Sbjct: 185 KEAVSLLTRNVLSDALVRRCNPILPLRELRIRKVRVVRTPKFDAQALLSAH 235
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 71.7 bits (168), Expect = 2e-11
Identities = 35/86 (40%), Positives = 54/86 (62%)
Frame = -1
Query: 536 RRICART*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS 357
R I A + F GM LT DKL +++K++T+I+A++D KT DG++LR+F IGFT K +
Sbjct: 84 RSIAAGSEVYTQFAGMRLTHDKLDSIMRKYRTMIDASVDAKTADGFILRLFTIGFTKKLA 143
Query: 356 LSQRKTCYAQHTQVRAIRKKMCEIIT 279
S + YA + R +R M + +T
Sbjct: 144 NSHKNHTYANSHKARQVRDVMIKALT 169
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ NFHGMD+T K + +K I+ +D+ TTDGY+LRVF I FT++ +RK C+
Sbjct: 96 CLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTTDGYLLRVFVIAFTDRFRFQRRKNCH 155
Query: 332 AQHTQVRAIRKKMCEIITRDV 270
+ +R +R + E + ++
Sbjct: 156 VKGRVIRMMRAGIYETLHNEL 176
Score = 34.7 bits (76), Expect = 2.2
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -3
Query: 249 VVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+V KL + + +A I RDV IR+VKV+KRPR + L +H
Sbjct: 184 LVTKLSNFEVNAKLTEALQKITMCRDVMIRRVKVVKRPRNTMELLSTMH 232
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 62.1 bits (144), Expect = 1e-08
Identities = 32/57 (56%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Frame = -3
Query: 177 RDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXGD----KSERPEGYEPPVQESV 19
R +C++KVK+LK+P+FE+ KLMELH GD K ER EGYEPPVQESV
Sbjct: 63 RVMCLKKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEPPVQESV 119
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 50.4 bits (115), Expect = 4e-05
Identities = 29/79 (36%), Positives = 50/79 (63%)
Frame = -1
Query: 494 GMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQV 315
G +LTTD +R +VK+ + I+AN+DV+T DG+V+RV FT K A+ +Q+
Sbjct: 84 GHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIRVKPTCFTIK---------RARSSQM 134
Query: 314 RAIRKKMCEIITRDVTNSE 258
+AIR+ M +I+ + + ++
Sbjct: 135 QAIREMMVDIVKKRASETD 153
>UniRef50_Q8TVD1 Cluster: 30S ribosomal protein S3Ae; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3Ae -
Methanopyrus kandleri
Length = 211
Score = 41.1 bits (92), Expect = 0.025
Identities = 28/73 (38%), Positives = 41/73 (56%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 321
F G L D +R +V++ + I+ IDV T DGY +RV + FT T A+ +
Sbjct: 75 FEGHRLMRDYVRSLVRRGTSRIDGVIDVVTKDGYKVRVAGLAFT---------TRRAKTS 125
Query: 320 QVRAIRKKMCEII 282
Q RAIRK+M ++I
Sbjct: 126 QQRAIRKEMFKVI 138
>UniRef50_Q0W2K9 Cluster: 30S ribosomal protein S3AE; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S3AE -
Uncultured methanogenic archaeon RC-I
Length = 225
Score = 39.1 bits (87), Expect = 0.10
Identities = 28/84 (33%), Positives = 47/84 (55%)
Frame = -1
Query: 503 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 324
+F G +LT D +R +VK+ + I+AN+ V T DG+ +RV I T K A+
Sbjct: 80 SFLGHELTRDYMRSLVKRRTSKIDANVVVTTKDGFKVRVKPIVLTVK---------RART 130
Query: 323 TQVRAIRKKMCEIITRDVTNSELG 252
+Q+ +IR+ M ++ + +ELG
Sbjct: 131 SQIESIRQIMINVVNK--RGAELG 152
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 38.3 bits (85), Expect = 0.18
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKT 339
F G D+TTD +R M+++ ++ I+ +V+T+DGY +RV + ++ S KT
Sbjct: 86 FIGHDMTTDYIRRMIRRRRSRIDMIFNVETSDGYRMRVKVLTVPDRRIKSSIKT 139
Score = 32.7 bits (71), Expect = 8.9
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 252 EVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLM 112
E V +I D +++ K IYP+R + IRK +VL P +I +L+
Sbjct: 160 EYVKYIISDDAPRELSKELKVIYPVRRIEIRKSEVLHFPEEKIVELV 206
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 37.5 bits (83), Expect = 0.31
Identities = 27/82 (32%), Positives = 41/82 (50%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 321
F G +L D +R + ++ + + +V T DGY LRV + FT R+ C + +
Sbjct: 79 FKGHELLRDYIRGLTRRKSSKVTGIFNVWTKDGYGLRVTAMAFT-------RQRC--KTS 129
Query: 320 QVRAIRKKMCEIITRDVTNSEL 255
Q AIRK M EI+ + S L
Sbjct: 130 QKSAIRKVMQEIVEQKARESTL 151
>UniRef50_A7D401 Cluster: Ribosomal protein S3Ae; n=2;
Halorubrum|Rep: Ribosomal protein S3Ae - Halorubrum
lacusprofundi ATCC 49239
Length = 215
Score = 37.1 bits (82), Expect = 0.41
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = -1
Query: 488 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDS-LSQRK 342
+LT D LR +V++ + +EA+I V TTD Y +RV + T K + SQ K
Sbjct: 83 ELTRDYLRSLVRRGASKVEASITVLTTDDYRIRVQPVALTTKKADRSQEK 132
>UniRef50_Q5V296 Cluster: 30S ribosomal protein S3Ae; n=4;
Halobacteriaceae|Rep: 30S ribosomal protein S3Ae -
Haloarcula marismortui (Halobacterium marismortui)
Length = 213
Score = 35.1 bits (77), Expect = 1.7
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = -1
Query: 488 DLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRA 309
+LT D LR +V++ + +EA I V TTD Y +++ + T K A +Q +A
Sbjct: 83 ELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVTTKK---------ADASQEKA 133
Query: 308 IRKKMCEII 282
IR+ M +++
Sbjct: 134 IRRTMIDLV 142
>UniRef50_UPI00006CB684 Cluster: hypothetical protein
TTHERM_00446420; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00446420 - Tetrahymena
thermophila SB210
Length = 1054
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = -3
Query: 357 LEPTQDVLRPAHSGQSNQKENV*NHYTRRH*L*TREVVNKLIPDSIAKDIEKACHGI 187
L+P Q V + GQ+NQ +N N+ + TRE V +L PDS+ + +K H I
Sbjct: 471 LQPNQAVNKTFSEGQTNQNQNQENYQNINN---TREDVGQL-PDSLGQPFQKQFHSI 523
>UniRef50_A6FVI8 Cluster: Surface repeat protein, putative; n=2;
cellular organisms|Rep: Surface repeat protein, putative
- Roseobacter sp. AzwK-3b
Length = 5954
Score = 34.3 bits (75), Expect = 2.9
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 46 ALRPFRLVSGFPLASTAFAVKFHQLR-DLETGPLQHFHLSDANIAQRVDAMAGLLDVLGN 222
AL RL + P+ V QL D+ TGP+ H + D Q V A GL+D+ GN
Sbjct: 5486 ALSVLRLGALVPVGPDGLGVALDQLDLDVTTGPV-HLNERDGIDLQSVIARDGLIDIFGN 5544
Query: 223 GV 228
G+
Sbjct: 5545 GL 5546
>UniRef50_Q1JT13 Cluster: Putative uncharacterized protein; n=1;
Toxoplasma gondii RH|Rep: Putative uncharacterized
protein - Toxoplasma gondii RH
Length = 2318
Score = 34.3 bits (75), Expect = 2.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 435 DESLPFFNHPPELIGCEVHAVEVADTLRPCTYSAINLNLRKDLSASVSSLEI 590
+ + P +HP L C H + + P +++ +LR SAS SSL I
Sbjct: 1963 EPAAPHASHPASLPPCSAHTTSLPSSFSPSVSTSVFSHLRSSASASASSLGI 2014
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 34.3 bits (75), Expect = 2.9
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT-NKDSLSQRKTCYAQH 324
F +LT + L + ++ + IE +DV T DGY LRV + FT + SQ++ A
Sbjct: 85 FWRFELTREYLNSLTRRRTSKIEDIVDVTTADGYKLRVKSVVFTVRRCKTSQKRAIRAIM 144
Query: 323 TQV 315
Q+
Sbjct: 145 RQI 147
>UniRef50_A4YCU2 Cluster: Ribosomal protein S3Ae; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S3Ae - Metallosphaera sedula DSM 5348
Length = 216
Score = 33.5 bits (73), Expect = 5.1
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFT 369
F G +L+ D +R +V++ + I +D+ T DG+ LRV + T
Sbjct: 87 FAGHELSRDYVRSLVRRKSSKINKVVDITTKDGFTLRVKTLALT 130
>UniRef50_Q8BJM3 Cluster: Growth inhibition and
differentiation-related protein 88 homolog; n=10;
Eutheria|Rep: Growth inhibition and
differentiation-related protein 88 homolog - Mus
musculus (Mouse)
Length = 775
Score = 33.5 bits (73), Expect = 5.1
Identities = 23/111 (20%), Positives = 37/111 (33%)
Frame = +3
Query: 12 LIKHSLEREARSPPAVQTXXXXXXXXXXXXXEVPSTSRSRNGASSTLSPFGCKHRAEGRC 191
L+K S + E PPA S+ R S C+
Sbjct: 30 LLKSSDQEEGHGPPAFVPKDQKEGCLPQKISASKPESQRRGAGHSDRKDVDCREGKRSAS 89
Query: 192 HGRPSRCPWQWSQESTCSPPPEFRVSDVACNDFTHFLSDCSDLSVLGVARL 344
R RCP + ++E CS ++ + + H D +S + + RL
Sbjct: 90 QLRKDRCPQKQNKEKACSKKGAEESTEASSQEHQHRAPDAGIVSSIPLQRL 140
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 6.7
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +3
Query: 270 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 377
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A0RTS7 Cluster: Ribosomal protein S3AE; n=2;
Thermoprotei|Rep: Ribosomal protein S3AE - Cenarchaeum
symbiosum
Length = 203
Score = 33.1 bits (72), Expect = 6.7
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRK 342
F + + + LR +V++ + + +DVKT+DGYV R+ + T + + +K
Sbjct: 82 FKRYEYSKEYLRSLVRRGSSKVNYIVDVKTSDGYVFRLKVLALTYRHLNTSKK 134
>UniRef50_Q58QC3 Cluster: Nephrin; n=3; Euteleostomi|Rep: Nephrin -
Xenopus laevis (African clawed frog)
Length = 1238
Score = 32.7 bits (71), Expect = 8.9
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -2
Query: 532 EYVQGRNVSATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSSALVSPIRTP* 353
EY +G ++ T +S P S+ W+KNG L + + SS+ V+ I T
Sbjct: 539 EYRRGSTITLTCVTGSSNPASTISWVKNGEQLKAQDLGRKPSLYGGISSSSRVTLIATSK 598
Query: 352 ANARRATPSTLRSEQSE 302
N RR + S +E
Sbjct: 599 DNGRRVSCEAFSSVLNE 615
>UniRef50_Q0KDB8 Cluster: L-Amino-acid oxidase; n=3; cellular
organisms|Rep: L-Amino-acid oxidase - Ralstonia eutropha
(strain ATCC 17699 / H16 / DSM 428 / Stanier
337)(Cupriavidus necator (strain ATCC 17699 / H16 / DSM
428 / Stanier337))
Length = 434
Score = 32.7 bits (71), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 490 WTSQPISSGGWL--KNGRLSSKPTLM*RQPMDTFYVSSALVSPI 365
W + P S GGW+ + G L+ LM RQP + + A ++PI
Sbjct: 363 WANDPFSKGGWMHHRPGNLTQAAPLM-RQPHGRIHFAGADIAPI 405
>UniRef50_Q3LW71 Cluster: Ribosomal protein S3a; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 215
Score = 32.7 bits (71), Expect = 8.9
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = -1
Query: 500 FHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHT 321
F+G L+ D + MV K L+E +I + T V+ +F + +T +L Y + +
Sbjct: 98 FNGFRLSYDFIFSMVLKPTKLVEFSIKINTLKKKVVEIFVL-YTITKNLHSNSITYGKRS 156
Query: 320 QVRAIRKKMCEIITRDVTNSEL 255
++R I ++ I + + N +
Sbjct: 157 RIRKINRESILCIKKMLENKPI 178
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,447,846
Number of Sequences: 1657284
Number of extensions: 14605549
Number of successful extensions: 42341
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 40749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42323
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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