Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0462.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 98 9e-22
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 96 4e-21
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.5
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 27 3.4
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 6.0
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 7.9
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 7.9
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.9
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 98.3 bits (234), Expect = 9e-22
Identities = 42/86 (48%), Positives = 64/86 (74%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT Y
Sbjct: 96 CLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTY 155
Query: 332 AQHTQVRAIRKKMCEIITRDVTNSEL 255
AQ +Q+RAIR+KM ++I ++ +
Sbjct: 156 AQSSQIRAIRQKMFQVIQNQTSSCSM 181
Score = 63.7 bits (148), Expect = 2e-11
Identities = 27/51 (52%), Positives = 40/51 (78%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ + KL+ELH
Sbjct: 182 RELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 589 ISKLDTDAERSFRKFRLIAEYVQGRN 512
++ L D E +FRK +L E +QG++
Sbjct: 70 LADLQKDEEHAFRKVKLRVEDIQGKS 95
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 96.3 bits (229), Expect = 4e-21
Identities = 41/77 (53%), Positives = 60/77 (77%)
Frame = -1
Query: 512 CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 333
C+ +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT Y
Sbjct: 96 CLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTY 155
Query: 332 AQHTQVRAIRKKMCEII 282
AQ +Q+RAI +KM ++I
Sbjct: 156 AQSSQIRAIHQKMFQVI 172
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/51 (54%), Positives = 40/51 (78%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ + KL+ELH
Sbjct: 182 KELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 589 ISKLDTDAERSFRKFRLIAEYVQGRN 512
++ L D E SFRK +L E +QG++
Sbjct: 70 LADLQKDEEHSFRKVKLRVEDIQGKS 95
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +3
Query: 111 PSTSRSRNGASSTLSPFGCKHRAE 182
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 491 CRGSCRHITSLHIFGD*SEFAERPFRVSVKLG 586
C G + + LH+ GD S + F V++K+G
Sbjct: 409 CAGPLQKVVGLHLVGDFSAEILQGFGVAIKMG 440
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -3
Query: 384 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 292
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -1
Query: 467 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 178 ARCLHPKGESVEEAPFRDLEVD 113
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 488 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 390
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,198
Number of Sequences: 5004
Number of extensions: 59063
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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