Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0462.Seq
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 114 6e-26
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 112 3e-25
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 111 5e-25
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.5
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 29 3.5
02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852 29 3.5
10_01_0006 + 74000-76441 29 4.7
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.2
05_06_0290 - 26961926-26962423 28 6.2
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 28 6.2
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 28 8.2
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 114 bits (275), Expect = 6e-26
Identities = 56/114 (49%), Positives = 78/114 (68%)
Frame = -1
Query: 596 LADLQA*H*RGKVFPQIQINRRICART*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 417
LADLQ + + + +I++ + NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQ--NDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 416 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 255
KTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L
Sbjct: 128 KTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDL 181
Score = 67.7 bits (158), Expect = 8e-12
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 182 KELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 112 bits (269), Expect = 3e-25
Identities = 55/114 (48%), Positives = 77/114 (67%)
Frame = -1
Query: 596 LADLQA*H*RGKVFPQIQINRRICART*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 417
LADLQ + + + +I++ + NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQ--NDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 416 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 255
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDL 181
Score = 67.7 bits (158), Expect = 8e-12
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 182 KELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 111 bits (267), Expect = 5e-25
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = -1
Query: 596 LADLQA*H*RGKVFPQIQINRRICART*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 417
LADLQ + + + ++++ + NF GM TTDKLR +VKKWQTLIEA++DV
Sbjct: 70 LADLQ--NDEDQAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDV 127
Query: 416 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 255
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDL 181
Score = 66.9 bits (156), Expect = 1e-11
Identities = 28/51 (54%), Positives = 42/51 (82%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 182 KELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 252 EVVNKLIPDSIAKDIEKACHGIYPLRD 172
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 138 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPPEF 260
A++ SPF + GRC PS P S S+ +PPP F
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPPVF 117
>02_05_1177 + 34739359-34740304,34740401-34740568,34740672-34741852
Length = 764
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3
Query: 231 ESTCSPPPEFRVSDVACNDFT 293
ES C PPPE R SDV + +T
Sbjct: 103 ESKCYPPPEERSSDVPTSSYT 123
>10_01_0006 + 74000-76441
Length = 813
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 183 GRCHGRPSRCPWQWSQESTCSPPPEFRVSDVAC 281
G C G + C Q + +TC PP +R + C
Sbjct: 275 GACQGEANICVPQGADNTTCVCPPGYRPQGLGC 307
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 508 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 419
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>05_06_0290 - 26961926-26962423
Length = 165
Score = 28.3 bits (60), Expect = 6.2
Identities = 27/105 (25%), Positives = 42/105 (40%)
Frame = -2
Query: 562 RSFRKFRLIAEYVQGRNVSATSTAWTSQPISSGGWLKNGRLSSKPTLM*RQPMDTFYVSS 383
R +R + + + RN T S +S G + R S PT R+ +
Sbjct: 35 RRWRNHEQLPQEITARNAPREHTQ--SPHLSLPGPRRRARTSIPPTDPRREEAGQEETDA 92
Query: 382 ALVSPIRTP*ANARRATPSTLRSEQSERKCVKSLHATSLTLNSGG 248
SP+ +AR PS+L + ER+ + + TL SGG
Sbjct: 93 DSSSPVLGSDGDARIQRPSSLGAAWQERERRQHADPPASTLGSGG 137
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 213 PWQWSQESTCSPPPEFRVSDVACNDFTH-FLSDCSDLSVLGVA 338
PW W + CSPPP S + FLS C VLG A
Sbjct: 9 PW-WLSTTACSPPPPSSSSFSLSDRLAFLFLSPCPQRVVLGGA 50
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +1
Query: 16 LNTLLNGRLVALRPFRLVSGFPLASTAFAVKFHQLRDLETGPL 144
L+TL +G++V R +SG P A V +H L E GPL
Sbjct: 366 LSTLPDGKIV-----RGLSGLPKQGPAVIVGYHMLLGFELGPL 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,769,211
Number of Sequences: 37544
Number of extensions: 425848
Number of successful extensions: 1277
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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