Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0462.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)          94   1e-19
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               29   4.8  
SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)                     28   6.3  
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 49/84 (58%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
 Frame = -3

Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-----XXXX 91
           +EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+I KLME+H         
Sbjct: 65  KEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGEASSHATT 124

Query: 90  XXXXXXGDKSERPEGYEPPVQESV 19
                 G K +R EG+EPP+Q++V
Sbjct: 125 TTTDETGTKIDR-EGFEPPIQDTV 147



 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 40/63 (63%), Positives = 53/63 (84%)
 Frame = -1

Query: 443 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTN 264
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ 
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVST 61

Query: 263 SEL 255
           ++L
Sbjct: 62  NDL 64


>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -2

Query: 562 RSFRKFRLIAEYVQGRNVSATSTAWTSQPISSGGWLKNGR 443
           R++ K  LI     G      +  W   P++  GW  NGR
Sbjct: 22  RTWHKAELIPPQWPGAQGQLRTVTWHGSPVTRNGWTWNGR 61


>SB_22837| Best HMM Match : REJ (HMM E-Value=0.057)
          Length = 643

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
 Frame = -3

Query: 579 LTLTR-KGLSANSD*SPNMCKDVMCLQLPRHGPH------NR*AQVDG*KMADSH 436
           LT+T  KGL+ +   + N+ KDV    + R GP       NR A++DG K +D H
Sbjct: 309 LTVTDDKGLTGSGTVAVNVKKDVNQAPVARAGPDVVVHLPNRAAELDGSKSSDDH 363


>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 403  PSVVFTSMLASMRVCHFLTIHLSLSVVRSMPWKLQTHY 516
            PS  +T + A++   HF     S+ +V  + WK++  Y
Sbjct: 1017 PSCKYTFLKAALSPVHFRRCFFSILIVTFIAWKIKVRY 1054


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,256,522
Number of Sequences: 59808
Number of extensions: 477455
Number of successful extensions: 1289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)