Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0462.Seq
         (698 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   136   8e-34
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    27   0.75 
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    24   5.3  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   7.0  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  136 bits (328), Expect = 8e-34
 Identities = 60/83 (72%), Positives = 73/83 (87%)
 Frame = -1

Query: 503 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 324
           NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCIGFT KDS+SQRKTCYAQH
Sbjct: 102 NFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCIGFTIKDSMSQRKTCYAQH 161

Query: 323 TQVRAIRKKMCEIITRDVTNSEL 255
           +Q++ IR KM  II R++T+++L
Sbjct: 162 SQIKNIRAKMTAIIKREITSTDL 184



 Score = 95.9 bits (228), Expect = 1e-21
 Identities = 50/83 (60%), Positives = 56/83 (67%), Gaps = 6/83 (7%)
 Frame = -3

Query: 249 VVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXXXG 70
           VV KL+PDSIAKDIEKAC  +YPL DV IRKVKVLK+PRF++S LMELH           
Sbjct: 187 VVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGDGGGKAAEVS 246

Query: 69  DKSE------RPEGYEPPVQESV 19
             +       RPEGYEPPVQ SV
Sbjct: 247 TGAASGVVVVRPEGYEPPVQASV 269



 Score = 37.5 bits (83), Expect = 4e-04
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -2

Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
           + DAERSFRKF+L+AE V GR+V
Sbjct: 77  EPDAERSFRKFKLVAESVNGRDV 99


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 187 LPSARCLHPKGESVEEAPFRDLEVDGT 107
           +P   C H  G ++E+A    LE DGT
Sbjct: 557 MPPKGCSHDDGPALEKAQLYQLESDGT 583


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 LSDANIAQRVDAMAGLLDVLGNGVRNQLV 243
           L+ AN  QR++    L D++G+  RN+++
Sbjct: 560 LAIANALQRINTPKYLYDIIGDYFRNRVL 588


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)
 Frame = +3

Query: 132 NGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 248
           NG    +   G  H   G    RPSR    ++  S C P
Sbjct: 146 NGLGLEVLNIGTSHTFRGCGSARPSRIDVAFASPSICRP 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,145
Number of Sequences: 2352
Number of extensions: 16023
Number of successful extensions: 44
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)