Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0462.Seq
(698 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p pro... 138 7e-33
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 134 1e-31
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 134 1e-31
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 134 1e-31
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 128 7e-30
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 120 3e-27
>AY070949-1|AAL48571.1| 217|Drosophila melanogaster RE04220p
protein.
Length = 217
Score = 138 bits (334), Expect = 7e-33
Identities = 68/114 (59%), Positives = 83/114 (72%)
Frame = -1
Query: 509 VCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
+CNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA
Sbjct: 100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 159
Query: 329 QHTQVRAIRKKMCEIITRDVTNSELGRW*TS*FLTPLPRTSRRPAMASTLCAMF 168
Q +QVR IR +M +IIT +V+ ++L + TS T L + S++ A MF
Sbjct: 160 QQSQVRKIRARMTDIITNEVSGADLKQLLTSWPWTRLRKISKKAVSAYIHYMMF 213
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2
Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
D D ERSFRKFRLIAE VQ RNV
Sbjct: 77 DIDPERSFRKFRLIAEDVQDRNV 99
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 134 bits (324), Expect = 1e-31
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = -1
Query: 509 VCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
+CNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA
Sbjct: 100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 159
Query: 329 QHTQVRAIRKKMCEIITRDVTNSEL 255
Q +QVR IR +M +IIT +V+ ++L
Sbjct: 160 QQSQVRKIRARMTDIITNEVSGADL 184
Score = 99 bits (238), Expect = 3e-21
Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 185 KQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVE 244
Query: 75 XGDKSE-----RPEGYEPPVQESV 19
SE RPEGYEPPVQE+V
Sbjct: 245 AVVSSEGAVIDRPEGYEPPVQEAV 268
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2
Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
D D ERSFRKFRLIAE VQ RNV
Sbjct: 77 DIDPERSFRKFRLIAEDVQDRNV 99
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 134 bits (324), Expect = 1e-31
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = -1
Query: 509 VCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
+CNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA
Sbjct: 50 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 109
Query: 329 QHTQVRAIRKKMCEIITRDVTNSEL 255
Q +QVR IR +M +IIT +V+ ++L
Sbjct: 110 QQSQVRKIRARMTDIITNEVSGADL 134
Score = 99 bits (238), Expect = 3e-21
Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 135 KQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVE 194
Query: 75 XGDKSE-----RPEGYEPPVQESV 19
SE RPEGYEPPVQE+V
Sbjct: 195 AVVSSEGAVIDRPEGYEPPVQEAV 218
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2
Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
D D ERSFRKFRLIAE VQ RNV
Sbjct: 27 DIDPERSFRKFRLIAEDVQDRNV 49
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 134 bits (324), Expect = 1e-31
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = -1
Query: 509 VCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
+CNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA
Sbjct: 100 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 159
Query: 329 QHTQVRAIRKKMCEIITRDVTNSEL 255
Q +QVR IR +M +IIT +V+ ++L
Sbjct: 160 QQSQVRKIRARMTDIITNEVSGADL 184
Score = 99 bits (238), Expect = 3e-21
Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 185 KQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVE 244
Query: 75 XGDKSE-----RPEGYEPPVQESV 19
SE RPEGYEPPVQE+V
Sbjct: 245 AVVSSEGAVIDRPEGYEPPVQEAV 268
Score = 39.5 bits (88), Expect = 0.004
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -2
Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
D D ERSFRKFRLIAE VQ RNV
Sbjct: 77 DIDPERSFRKFRLIAEDVQDRNV 99
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 128 bits (309), Expect = 7e-30
Identities = 59/86 (68%), Positives = 70/86 (81%), Gaps = 1/86 (1%)
Frame = -1
Query: 509 VCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
+CNFHGMDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYA
Sbjct: 101 LCNFHGMDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYA 160
Query: 329 QHTQVRAIRK-KMCEIITRDVTNSEL 255
+QVR IR +M +IIT +V+ ++L
Sbjct: 161 HESQVRKIRSGRMTDIITNEVSGADL 186
Score = 86.2 bits (204), Expect = 4e-17
Identities = 47/84 (55%), Positives = 57/84 (67%), Gaps = 5/84 (5%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 187 KQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVE 246
Query: 75 XGDKSE-RPEG----YEPPVQESV 19
SE P+ +PPVQESV
Sbjct: 247 AVVSSEGAPKSTALKVKPPVQESV 270
Score = 37.5 bits (83), Expect = 0.017
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -2
Query: 577 DTDAERSFRKFRLIAEYVQGRNV 509
D D E SFRKFRLIAE VQ RNV
Sbjct: 78 DIDPEHSFRKFRLIAEDVQDRNV 100
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 120 bits (288), Expect = 3e-27
Identities = 55/79 (69%), Positives = 65/79 (82%)
Frame = -1
Query: 491 MDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVR 312
MDLTTDK R MVKKWQTLIEA ++ KT DGY+LRVFCIGFT KD SQRKTCYAQ +QVR
Sbjct: 1 MDLTTDKYRSMVKKWQTLIEAIVEAKTVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVR 60
Query: 311 AIRKKMCEIITRDVTNSEL 255
IR +M +IIT +V+ ++L
Sbjct: 61 KIRARMTDIITNEVSGADL 79
Score = 99 bits (238), Expect = 3e-21
Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Frame = -3
Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 80 KQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVE 139
Query: 75 XGDKSE-----RPEGYEPPVQESV 19
SE RPEGYEPPVQE+V
Sbjct: 140 AVVSSEGAVIDRPEGYEPPVQEAV 163
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,177,876
Number of Sequences: 53049
Number of extensions: 692737
Number of successful extensions: 1863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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