Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0462.Seq
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    91   5e-19
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical p...    29   4.2  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 44/83 (53%), Positives = 55/83 (66%)
 Frame = -1

Query: 503 NFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQH 324
           NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y + 
Sbjct: 97  NFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKT 156

Query: 323 TQVRAIRKKMCEIITRDVTNSEL 255
           +++R IR +M   I ++VT  +L
Sbjct: 157 SKIRKIRSEMIGCIEKEVTGCDL 179



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 42/79 (53%), Positives = 58/79 (73%)
 Frame = -3

Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXXXXXXXXX 76
           +EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +LH         
Sbjct: 180 KEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH-GDSITVGA 238

Query: 75  XGDKSERPEGYEPPVQESV 19
            G+K +RP+ YEPPVQ+ V
Sbjct: 239 DGEKVDRPDDYEPPVQQEV 257



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = -2

Query: 571 DAERSFRKFRLIAEYVQGRNV 509
           ++E  FRKF+LIAE VQG+NV
Sbjct: 74  NSEADFRKFKLIAEDVQGKNV 94


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +3

Query: 114 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP-EFRVSDVACN 284
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP    V D  C 
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPPFSMNVPDFHCF 153

Query: 285 DFTHFLSDCSDLSVLGV 335
                 ++     V+GV
Sbjct: 154 IDEKMRAEVEIFHVIGV 170


>Z83225-2|CAB05722.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 294 HFLSDCSDLSVLGVARLALAQGVLIGETNAEDT*NVSIGCLHINVGFDESLPFFNHPP-- 467
           H+L+  S  + +  AR  L +G  +   + +    +   C H NV   + L  F   P  
Sbjct: 33  HYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMS 92

Query: 468 -ELIGCEVHAVEVADTLR 518
            + +G   +++   +TLR
Sbjct: 93  ADKLGRTAYSIAKGNTLR 110


>Z81097-19|CAB03177.1|  732|Caenorhabditis elegans Hypothetical
           protein F42H11.2 protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +3

Query: 294 HFLSDCSDLSVLGVARLALAQGVLIGETNAEDT*NVSIGCLHINVGFDESLPFFNHPP-- 467
           H+L+  S  + +  AR  L +G  +   + +    +   C H NV   + L  F   P  
Sbjct: 33  HYLAASSSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPMS 92

Query: 468 -ELIGCEVHAVEVADTLR 518
            + +G   +++   +TLR
Sbjct: 93  ADKLGRTAYSIAKGNTLR 110


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 228 QESTCSPPPEFRVSDVACNDFTHFLSDCSDLSVLGVAR 341
           Q  +  PPP   ++ V CNDF    S C D+S   ++R
Sbjct: 61  QVLSTGPPPG--LAPVQCNDFDSCYSSCDDISHPSLSR 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,155,922
Number of Sequences: 27780
Number of extensions: 345771
Number of successful extensions: 1106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)