Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0462.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   114   5e-26
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           114   6e-26
At3g17380.1 68416.m02221 meprin and TRAF homology domain-contain...    31   0.56 
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    30   1.3  
At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g66100.1 68418.m08327 La domain-containing protein similar to...    27   9.0  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  114 bits (275), Expect = 5e-26
 Identities = 49/85 (57%), Positives = 67/85 (78%)
 Frame = -1

Query: 509 VCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 330
           +C F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCYA
Sbjct: 97  LCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYA 156

Query: 329 QHTQVRAIRKKMCEIITRDVTNSEL 255
           Q +Q+R IR+KM +I+ R+ ++ +L
Sbjct: 157 QSSQIRQIRRKMRDIMVREASSCDL 181



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 28/51 (54%), Positives = 43/51 (84%)
 Frame = -3

Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
           +++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLM++H
Sbjct: 182 KDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVH 232



 Score = 31.1 bits (67), Expect = 0.73
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -2

Query: 589 ISKLDTDAERSFRKFRLIAEYVQGRNV 509
           ++ L  D + ++RK RL AE VQGRNV
Sbjct: 70  LADLQGDEDNAYRKIRLRAEDVQGRNV 96


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  114 bits (274), Expect = 6e-26
 Identities = 55/114 (48%), Positives = 78/114 (68%)
 Frame = -1

Query: 596 LADLQA*H*RGKVFPQIQINRRICART*CVCNFHGMDLTTDKLRWMVKKWQTLIEANIDV 417
           LADLQ  +     + +I++          +  F GMD TTDKLR +VKKWQTLIEA++DV
Sbjct: 70  LADLQ--NDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDV 127

Query: 416 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSEL 255
           KTTDGY LR+FCI FT + +   ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L
Sbjct: 128 KTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDL 181



 Score = 71.3 bits (167), Expect = 6e-13
 Identities = 30/51 (58%), Positives = 43/51 (84%)
 Frame = -3

Query: 255 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 103
           +E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 182 KELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVH 232


>At3g17380.1 68416.m02221 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 309

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 574 TDAERSFRKFRL-IAEYVQGRNVSATSTAWTSQPISSGGWLK 452
           +D  + F +F + I + +QGR+++   T W S+  S  GW+K
Sbjct: 233 SDGTKIFVEFTIRIFDQLQGRHIAGKVTKWFSRSSSEHGWVK 274


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 282 NDFTH-FLSDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 446
           N F H  L D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 430 NKFYHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At5g18475.1 68418.m02177 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535:  PPR repeat
          Length = 506

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 243 SPPPEFRVSDVACNDFTHFLSDCSDLSVLGVARLALAQGVL 365
           SPPPE  +S V  N  T F+S  S +S++   R    QGVL
Sbjct: 35  SPPPESSISPVETNPKTKFISHESAVSLM--KRERDPQGVL 73


>At5g66100.1 68418.m08327 La domain-containing protein similar to
           SP|P40796 La protein homolog (La ribonucleoprotein) (La
           autoantigen homolog) {Drosophila melanogaster}; contains
           Pfam profile PF05383: La domain
          Length = 453

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -2

Query: 271 SLTLNSGGGEQVDS*LHCQGHREGLPWHLPSARCLHPKGESVEEAPF 131
           S   NS     +DS +    H +  PW LPS    HP     ++ PF
Sbjct: 7   SSAANSASRFSIDSSISRSRHGDSSPWLLPSDSHDHPTLSLSQDDPF 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,601
Number of Sequences: 28952
Number of extensions: 328115
Number of successful extensions: 942
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)