Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0461.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0675 + 27183826-27184443                                         29   1.8  
09_02_0452 - 9498193-9498468                                           28   5.6  

>04_04_0675 + 27183826-27184443
          Length = 205

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 402 LRSGREFDIKLIDTVDLXGGPGPNSTYSES 491
           LRS R     L+D +DL  GP P+++ S+S
Sbjct: 77  LRSKRRRPCPLLDAIDLLDGPSPSASPSQS 106


>09_02_0452 - 9498193-9498468
          Length = 91

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 361 DPARLSAXG-VGTARPRPHGVARGPARXRQALLPSHH 254
           +P R  A     T RPR HG+A+ P   R A  P  H
Sbjct: 3   EPLRRGATEQAATTRPRRHGLAKEPPLHRGAAAPPLH 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,107
Number of Sequences: 37544
Number of extensions: 192653
Number of successful extensions: 559
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)