Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0461.Seq
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.         30   2.4  
M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein ( D.me...    30   2.4  
AY058752-1|AAL13981.1|  520|Drosophila melanogaster SD01552p pro...    30   2.4  
AL009195-1|CAA15708.1| 3345|Drosophila melanogaster EG:30B8.4,FB...    30   2.4  
AE014298-365|AAF45756.2| 3433|Drosophila melanogaster CG3443-PB ...    30   2.4  

>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
          Length = 2483

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 466  PGPPLRSTVSISLISNSRPLRSDIAXXGVGGAXVRDPARL-SAXGVGTARPRPHGVARGP 290
            P  P  +T+   L++  R    + +  G+ GA    P R  S+ GV + RP   G +RG 
Sbjct: 1964 PVKPTSTTLIAGLLNRER---DETSGSGIMGAGASGPTRATSSGGVRSRRPEV-GSSRGR 2019

Query: 289  ARXRQALLP 263
               R+A LP
Sbjct: 2020 DHERRATLP 2028


>M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein (
            D.melanogaster pecanexgene, exons 1 (partial) and 2. ).
          Length = 1938

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 466  PGPPLRSTVSISLISNSRPLRSDIAXXGVGGAXVRDPARL-SAXGVGTARPRPHGVARGP 290
            P  P  +T+   L++  R    + +  G+ GA    P R  S+ GV + RP   G +RG 
Sbjct: 1419 PVKPTSTTLIAGLLNRER---DETSGSGIMGAGASGPTRATSSGGVRSRRPEV-GSSRGR 1474

Query: 289  ARXRQALLP 263
               R+A LP
Sbjct: 1475 DHERRATLP 1483


>AY058752-1|AAL13981.1|  520|Drosophila melanogaster SD01552p
           protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 466 PGPPLRSTVSISLISNSRPLRSDIAXXGVGGAXVRDPARL-SAXGVGTARPRPHGVARGP 290
           P  P  +T+   L++  R    + +  G+ GA    P R  S+ GV + RP   G +RG 
Sbjct: 2   PVKPTSTTLIAGLLNRER---DETSGSGIMGAGASGPTRATSSGGVRSRRPEV-GSSRGR 57

Query: 289 ARXRQALLP 263
              R+A LP
Sbjct: 58  DHERRATLP 66


>AL009195-1|CAA15708.1| 3345|Drosophila melanogaster
            EG:30B8.4,FBgn0003048;pcx protein.
          Length = 3345

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 466  PGPPLRSTVSISLISNSRPLRSDIAXXGVGGAXVRDPARL-SAXGVGTARPRPHGVARGP 290
            P  P  +T+   L++  R    + +  G+ GA    P R  S+ GV + RP   G +RG 
Sbjct: 2827 PVKPTSTTLIAGLLNRER---DETSGSGIMGAGASGPTRATSSGGVRSRRPEV-GSSRGR 2882

Query: 289  ARXRQALLP 263
               R+A LP
Sbjct: 2883 DHERRATLP 2891


>AE014298-365|AAF45756.2| 3433|Drosophila melanogaster CG3443-PB
            protein.
          Length = 3433

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 466  PGPPLRSTVSISLISNSRPLRSDIAXXGVGGAXVRDPARL-SAXGVGTARPRPHGVARGP 290
            P  P  +T+   L++  R    + +  G+ GA    P R  S+ GV + RP   G +RG 
Sbjct: 2915 PVKPTSTTLIAGLLNRER---DETSGSGIMGAGASGPTRATSSGGVRSRRPEV-GSSRGR 2970

Query: 289  ARXRQALLP 263
               R+A LP
Sbjct: 2971 DHERRATLP 2979


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,501,396
Number of Sequences: 53049
Number of extensions: 303303
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)