Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0460.Seq
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   6.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   6.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   6.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   6.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.7  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 94  LMTAALCSTARNMDLSTLGGRFRLRS 17
           L T    S  ++ D+S+   RFRLRS
Sbjct: 40  LKTTQSVSVTKDQDVSSSVNRFRLRS 65


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 362 FIDADNVERVKSHADMELILSAVLYEVLIASRYVLPPKPL 481
           ++  +NVE+  +H   ++I   +  +     RYV P   L
Sbjct: 758 YLQIENVEQTLNHEIKKVIPGRITQKSCSTKRYVTPVNTL 797


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 238 GGRHRSSRLCAVPSSSSP 185
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 238 GGRHRSSRLCAVPSSSSP 185
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 238 GGRHRSSRLCAVPSSSSP 185
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 238 GGRHRSSRLCAVPSSSSP 185
           G   RSSR+C   SS  P
Sbjct: 145 GSLFRSSRMCFFKSSKKP 162


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 95   ANDGCIVQYRPEHGPLDAW 39
            A +G I  Y+  +GP D W
Sbjct: 1128 AANGVIKGYKVIYGPSDTW 1146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,862
Number of Sequences: 336
Number of extensions: 3555
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)