Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0460.Seq
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 169 4e-43
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 168 5e-43
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.58
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.58
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.58
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.58
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 29 0.76
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 4.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.4
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 7.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 7.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 169 bits (410), Expect = 4e-43
Identities = 80/121 (66%), Positives = 88/121 (72%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HL NKYL
Sbjct: 17 YPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYL 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +M
Sbjct: 77 VKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLM 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 101 bits (243), Expect = 7e-23
Identities = 67/200 (33%), Positives = 94/200 (47%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + S+ G + + LVS+EY Q++SEALE
Sbjct: 7 RCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALE 66
Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
A RIC K K S PF + + + +G
Sbjct: 67 AARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLV 126
Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
+ + VR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 127 ARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRS 186
Query: 107 EGRLANDGCIVQYRPEHGPL 48
G + DGC ++ + G L
Sbjct: 187 RGEIIPDGCYAKFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 168 bits (409), Expect = 5e-43
Identities = 80/121 (66%), Positives = 88/121 (72%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HL NKYL
Sbjct: 17 YPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYL 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +M
Sbjct: 77 VKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILM 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 101 bits (242), Expect = 9e-23
Identities = 67/200 (33%), Positives = 94/200 (47%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + S+ G + + LVS+EY Q++SEALE
Sbjct: 7 RCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALE 66
Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
A RIC K K S PF + + + +G
Sbjct: 67 AARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLV 126
Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
+ + VR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R
Sbjct: 127 ARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRS 186
Query: 107 EGRLANDGCIVQYRPEHGPL 48
G + DGC ++ + G L
Sbjct: 187 RGEIIPDGCYAKFLNKRGSL 206
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 93 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 227
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 93 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 227
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 93 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 227
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.58
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 93 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 227
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 518 AQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIPV 622
AQW+V G +LL I T +GI + P PR+ I V
Sbjct: 176 AQWRVSMGINLLWGII-TFIGISFLPESPRYLISV 209
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -3
Query: 265 PIMS-CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLM 89
PI S C + T R S RLC D++ +Y S + NV+++ C K L
Sbjct: 155 PIASHCLIATAYRSSSIRLC--------DMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLA 206
Query: 88 TAALCSTARNMDLSTLGGRF 29
+ + T R D+ + F
Sbjct: 207 SGSADGTCRLWDIRKVSSSF 226
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = -3
Query: 253 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 95
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 290 STLRLAKRTTHPSLEPISSS 349
+T +LAKR T PSL P S+
Sbjct: 957 TTTKLAKRITQPSLSPARST 976
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 223 SSRLCAVPSSSSPDVKRSTYQRSGVS 146
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 421 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 317
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 597 VGVYLIPRSVSSIWV 553
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 583 DPKIRIFDLGKKRATVDDFPLC 518
DPK+R+F KRAT + C
Sbjct: 320 DPKLRVFPFTTKRATHSELLRC 341
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,177
Number of Sequences: 5004
Number of extensions: 59865
Number of successful extensions: 187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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