Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0460.Seq
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624...   182   2e-46
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407...   180   7e-46
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...   175   2e-44
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287...    31   1.0  
05_01_0378 + 2970528-2971008,2971961-2972036,2972108-2972253,297...    30   1.4  
08_01_1053 - 10716970-10717474,10718259-10718323                       30   1.8  
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008...    28   5.6  
07_03_1509 - 27246721-27247350                                         28   5.6  
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369     28   7.4  
09_04_0690 - 19488879-19488999,19489143-19489390,19489969-194901...    28   7.4  
12_01_0453 - 3572745-3572918,3573370-3573430,3573646-3573783,357...    27   9.7  
02_01_0276 - 1838028-1838098,1838543-1838864                           27   9.7  

>11_01_0740 +
           6243517-6243526,6244822-6245323,6245415-6245496,
           6245741-6245821
          Length = 224

 Score =  182 bits (443), Expect = 2e-46
 Identities = 81/121 (66%), Positives = 95/121 (78%)
 Frame = -3

Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
           YPKSR+CRGVPDPKIRI+D+G K+  VD+FP CVHL      + +         ACNKY+
Sbjct: 17  YPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYM 76

Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
            KN GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++
Sbjct: 77  TKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLL 136

Query: 256 S 254
           S
Sbjct: 137 S 137



 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 70/203 (34%), Positives = 88/203 (43%), Gaps = 3/203 (1%)
 Frame = -2

Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRF---G*EESDR*RLSTVRALVSDEYXQLSSE 477
           RCYR  KNKP  +     G     DP +R    G ++           LVS E   +SSE
Sbjct: 7   RCYRQIKNKPYPKSRYCRGVP---DPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSE 63

Query: 476 ALEAGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQAS 297
           ALEA RI       K   K +        PF        +    +            +  
Sbjct: 64  ALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQ 123

Query: 296 GYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEK 117
           G C+          VR  +       EALRRAKFKFPGRQKI  S+KWGFTK+ R+E+ K
Sbjct: 124 GTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVK 183

Query: 116 LREEGRLANDGCIVQYRPEHGPL 48
           L+ EGR+ +DG   Q    HG L
Sbjct: 184 LKAEGRIMSDGVNAQLLGSHGRL 206


>03_02_0897 -
           12239375-12239458,12240035-12240116,12240213-12240714,
           12241150-12241303,12241458-12241629,12242237-12242443,
           12242926-12243323
          Length = 532

 Score =  180 bits (439), Expect = 7e-46
 Identities = 80/121 (66%), Positives = 95/121 (78%)
 Frame = -3

Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
           YPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHL      + +         ACNKY+
Sbjct: 324 YPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEALEAARIACNKYM 383

Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
            K+ GKD FH+R+  HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++
Sbjct: 384 AKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLL 443

Query: 256 S 254
           S
Sbjct: 444 S 444



 Score = 87.8 bits (208), Expect = 6e-18
 Identities = 73/205 (35%), Positives = 92/205 (44%), Gaps = 7/205 (3%)
 Frame = -2

Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRF---G*EESDR*RLSTVRALVSDEYXQLSSE 477
           RCYR  KNKP  +     G     DP +R    G ++           LVS E   +SSE
Sbjct: 314 RCYRQIKNKPYPKSRYCRGVP---DPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSE 370

Query: 476 ALEAGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQAS 297
           ALEA RI       K   K +        P+    H   +    S    D     +  A 
Sbjct: 371 ALEAARIACNKYMAKHAGKDAFHLRVCAHPY----HVLRINKMLSCAGADRLQTGMRGAF 426

Query: 296 GY-CSTCSHWTAHHV---VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERD 129
           G    TC+      V   VR  D   A   EALRRAKFKFPGRQ++  S KWGFT+++RD
Sbjct: 427 GKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRD 486

Query: 128 EFEKLREEGRLANDGCIVQYRPEHG 54
           E+ KL+ EGR+  DG   +    HG
Sbjct: 487 EYLKLKSEGRIVPDGVNAKLLTRHG 511


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score =  175 bits (427), Expect = 2e-44
 Identities = 79/121 (65%), Positives = 93/121 (76%)
 Frame = -3

Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
           YPKSR+CRGVPDPKIRI+D+G K+  VD+F  CVHL      +           ACNKY+
Sbjct: 13  YPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYM 72

Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
            K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++
Sbjct: 73  TKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLL 132

Query: 256 S 254
           S
Sbjct: 133 S 133



 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 65/190 (34%), Positives = 82/190 (43%), Gaps = 3/190 (1%)
 Frame = -2

Query: 644 CYRYCKNKPVSEIEVLSGCT*SQDPYLRF---G*EESDR*RLSTVRALVSDEYXQLSSEA 474
           CYR  KNKP  +     G     DP +R    G ++      S    LVS E   ++SEA
Sbjct: 4   CYRQIKNKPYPKSRYCRGVP---DPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEA 60

Query: 473 LEAGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASG 294
           LEA RI       K   K +        PF        +    +            +  G
Sbjct: 61  LEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG 120

Query: 293 YCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 114
            C+          VR          EALRRAKFKFPGRQKI  S+KWGFTK+ RDE+ +L
Sbjct: 121 TCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRL 180

Query: 113 REEGRLANDG 84
           + EGR+  DG
Sbjct: 181 KSEGRIMPDG 190


>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
            2879715-2879973,2880060-2880346,2880423-2880758,
            2880862-2881003,2881077-2881297,2881379-2881540,
            2881617-2881775,2881860-2882159,2882834-2883097,
            2883133-2883243,2883902-2883988
          Length = 1871

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 261  MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 353
            + CP+ + + VP  LP++P  P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655


>05_01_0378 +
           2970528-2971008,2971961-2972036,2972108-2972253,
           2972300-2972817
          Length = 406

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 362 NVIMRWS**APDWDAWCVWQASGYCSTCSHWTAHHVVR 249
           NV+ RW    P   AWC  + S +   CS W+  ++VR
Sbjct: 342 NVLGRWGH-GPVPGAWCSGRKSWFSDPCSQWSDVNIVR 378


>08_01_1053 - 10716970-10717474,10718259-10718323
          Length = 189

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 301 PQGTVARVR--IGQPIMSCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQS 140
           P GT+ ++   +GQPI      TG       LC++ S     + R  YQ  G++ S
Sbjct: 94  PMGTIRQLAEFLGQPISDAEEETGVVAEIVELCSLESMKKQKINREGYQGVGITFS 149


>09_03_0039 +
           11799277-11799486,11799565-11799710,11800758-11800860,
           11800996-11801182,11801299-11801392,11801530-11801683,
           11801963-11802067,11802151-11802267,11802688-11802801,
           11803171-11803260,11803875-11804057,11809196-11809550,
           11809574-11809643,11809993-11810167,11810251-11810351,
           11810390-11810516,11810639-11810716,11811926-11812270
          Length = 917

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/42 (23%), Positives = 26/42 (61%)
 Frame = +3

Query: 3   RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 128
           +++ +D + +LPP   ++ + +V+HN +  + +  +  LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725


>07_03_1509 - 27246721-27247350
          Length = 209

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 277 RIGQPIMSCALVTGGRHRSSRL---CAVP--SSSSPDVKRSTYQRSGVS 146
           R+  P+  C      RH   RL     +P  +SSSP+++R+T  R+G S
Sbjct: 131 RLQPPLSPCLSAGRRRHHLPRLHDAALIPGITSSSPELRRNTVARAGFS 179


>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
          Length = 269

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -2

Query: 233 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 57
           KA +I+   RR + K+PG QK+    + G          K      +A+DG ++Q   + 
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205

Query: 56  GPLDAWRKVQ 27
             L AWR ++
Sbjct: 206 AGLPAWRPMK 215


>09_04_0690 -
           19488879-19488999,19489143-19489390,19489969-19490196,
           19495784-19495897
          Length = 236

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
 Frame = +2

Query: 374 DNVERVKSHA--DMELIL----SAVLYEVLIASRYVLPPKPLSSAXHIRRTQVHAQWKVV 535
           D +E V S +  D++ I     S    +++ A+ Y L PK LS+A    R   + Q  + 
Sbjct: 74  DMIEEVSSSSRKDLQYIYDSTYSFATEDIVSANIYQLTPKQLSTATSGNRRHKNEQHGLT 133

Query: 536 NGRSLLTQIEDTDLGIRYTPTE 601
           N     ++I D D  +  +P E
Sbjct: 134 NDGPSSSRIVDVDRTLNSSPEE 155


>12_01_0453 -
           3572745-3572918,3573370-3573430,3573646-3573783,
           3573882-3574003,3574078-3574233,3575337-3575477,
           3575643-3576044
          Length = 397

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 361 MLSCAG-ADRLQTGMRGAFGKPQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSS 188
           +L CAG      T   G F + Q     + +G    S  +V    H SS L A+P++ S
Sbjct: 311 LLHCAGFVVGYTTAAIGGFKERQRRAISIEVGMQNSSLGVVLATAHFSSSLVALPAALS 369


>02_01_0276 - 1838028-1838098,1838543-1838864
          Length = 130

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +3

Query: 174 LLTSGELELGTAQS----LDDLCLPPVTRAHDMMGCPM 275
           LLTSG+L+L +A+S      D CLP   +     GC +
Sbjct: 20  LLTSGQLQLASAESEIGRCYDDCLPDCEQGSSRAGCKL 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,514
Number of Sequences: 37544
Number of extensions: 451244
Number of successful extensions: 1226
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)