Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0460.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         45   5e-05
SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)                  31   0.81 
SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)                       30   1.4  
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          30   1.9  
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         29   3.3  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   4.3  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_14070| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   7.5  
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)                 27   9.9  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = -3

Query: 322 MRGAFGKPQGTVARVRIGQPIMSCALVTGGR 230
           MRGAFGKPQGTVARV IGQ I+S     G +
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNK 31



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -2

Query: 254 VRSSDRWKAQVIEALRRAKFKFPGRQK 174
           +R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 24  IRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09)
          Length = 542

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 329 DWDAWCV-WQASGYCSTCSHWTAHHVVRSSDRWK 231
           D+DA C  W A G C + + W +     S  +WK
Sbjct: 468 DYDARCATWAAEGECDSNASWMSRECCESCKKWK 501


>SB_44509| Best HMM Match : EMI (HMM E-Value=4.2)
          Length = 782

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 289 VARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSP--DVKRSTYQRS 155
           + RVR  + + SCA V      S+R+CAV  SS    D++R   QRS
Sbjct: 221 IRRVRRQKSMRSCAKVAKDDRFSTRVCAVVRSSLKMIDIRRVRLQRS 267


>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 659

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +2

Query: 44  RREVHVPGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLIRRSFDVRGT*TWHGAEPR* 223
           +R++HV G + +   H  GG L    Q H +    NP++    +       T   A    
Sbjct: 10  KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAA---- 64

Query: 224 PVPSTCH*SAR--HDGLSNANTC 286
           P+P+    S    +DGLSNAN C
Sbjct: 65  PIPTQTSRSVALAYDGLSNANVC 87


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 451 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 353
           C  Y  KN  +D   +RM +HP H IRIN ++S
Sbjct: 122 CGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +1

Query: 271 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 411
           +C  V Q P AC   + S  GA +       Y C    K  V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
 Frame = -1

Query: 447 ISTS*RTAERISSISA*DFTLSTLSASIK---CYHALELIGSRLGCVVRLASLRV---L* 286
           +S++  T +  SS+   DFT+  L          HA++  G+R G   R+ ++ V   L 
Sbjct: 281 VSSTPETQQDSSSLP--DFTVPLLEMGFSRRHVLHAMQATGTRPGADTRMINVMVTWLLE 338

Query: 285 HVFALDSPSCRAL**QVEGTGHRGSAPCQVQVPRTSKDLRIKEVG 151
           H  + D  S ++     E   H     CQV VP+ +K +R    G
Sbjct: 339 HTVSDDGLSGQS----AEQENHLTCDICQVTVPQFNKHMRTHHPG 379


>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 326 WDAWCVWQASGYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAK 198
           W     W AS +   C H  A H +    +W  +++ +L R K
Sbjct: 329 WSETFHWSASCHGDECIHEMASHSLHPLHQWIIRLVTSLHRLK 371


>SB_14070| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -3

Query: 289 VARVRIGQPIMSCALVTGGRHRSSRLCAVPSS--SSPDVKRSTYQRSGVSQSMNVMSLRS 116
           + RVR+ + + SCA +T     S+R  A   +  ++  V RS+ +   + + +   S+RS
Sbjct: 28  IRRVRLQRSMRSCAKLTKDDRYSTRTTAEEHTQLAACAVVRSSLKMIDIRRVLRQRSMRS 87

Query: 115 CVK 107
           C K
Sbjct: 88  CAK 90


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 314 CVWQASGYCSTCSHWTAHHV 255
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
          Length = 434

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -2

Query: 167 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 39
           V K W  T +E   +     LR   R   D CI+ Y+ ++GPL  W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,560,318
Number of Sequences: 59808
Number of extensions: 496041
Number of successful extensions: 1527
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)