BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0460.Seq (648 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 45 5e-05 SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09) 31 0.81 SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) 30 1.4 SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) 30 1.9 SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 29 3.3 SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 4.3 SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7 SB_14070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7 SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 7.5 SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 27 9.9 >SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) Length = 50 Score = 45.2 bits (102), Expect = 5e-05 Identities = 21/31 (67%), Positives = 23/31 (74%) Frame = -3 Query: 322 MRGAFGKPQGTVARVRIGQPIMSCALVTGGR 230 MRGAFGKPQGTVARV IGQ I+S G + Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNK 31 Score = 43.6 bits (98), Expect = 1e-04 Identities = 20/27 (74%), Positives = 22/27 (81%) Frame = -2 Query: 254 VRSSDRWKAQVIEALRRAKFKFPGRQK 174 +R+ D KA IEALRRAKFKFPGRQK Sbjct: 24 IRTKDGNKAAAIEALRRAKFKFPGRQK 50 >SB_12223| Best HMM Match : ShTK (HMM E-Value=1.8e-09) Length = 542 Score = 31.1 bits (67), Expect = 0.81 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = -2 Query: 329 DWDAWCV-WQASGYCSTCSHWTAHHVVRSSDRWK 231 D+DA C W A G C + + W + S +WK Sbjct: 468 DYDARCATWAAEGECDSNASWMSRECCESCKKWK 501 >SB_44509| Best HMM Match : EMI (HMM E-Value=4.2) Length = 782 Score = 30.3 bits (65), Expect = 1.4 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%) Frame = -3 Query: 289 VARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSP--DVKRSTYQRS 155 + RVR + + SCA V S+R+CAV SS D++R QRS Sbjct: 221 IRRVRRQKSMRSCAKVAKDDRFSTRVCAVVRSSLKMIDIRRVRLQRS 267 >SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053) Length = 659 Score = 29.9 bits (64), Expect = 1.9 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%) Frame = +2 Query: 44 RREVHVPGGTAQCSRH*RGGPLHAASQTHHVHTL*NPTSLIRRSFDVRGT*TWHGAEPR* 223 +R++HV G + + H GG L Q H + NP++ + T A Sbjct: 10 KRQLHVRGLSRKWVMH-PGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAA---- 64 Query: 224 PVPSTCH*SAR--HDGLSNANTC 286 P+P+ S +DGLSNAN C Sbjct: 65 PIPTQTSRSVALAYDGLSNANVC 87 >SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) Length = 177 Score = 29.1 bits (62), Expect = 3.3 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -3 Query: 451 CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLS 353 C Y KN +D +RM +HP H IRIN ++S Sbjct: 122 CGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151 >SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) Length = 1023 Score = 28.7 bits (61), Expect = 4.3 Identities = 16/47 (34%), Positives = 19/47 (40%) Frame = +1 Query: 271 QCEHVLQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 411 +C V Q P AC + S GA + Y C K V CG G Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581 >SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2408 Score = 28.7 bits (61), Expect = 4.3 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 6/105 (5%) Frame = -1 Query: 447 ISTS*RTAERISSISA*DFTLSTLSASIK---CYHALELIGSRLGCVVRLASLRV---L* 286 +S++ T + SS+ DFT+ L HA++ G+R G R+ ++ V L Sbjct: 281 VSSTPETQQDSSSLP--DFTVPLLEMGFSRRHVLHAMQATGTRPGADTRMINVMVTWLLE 338 Query: 285 HVFALDSPSCRAL**QVEGTGHRGSAPCQVQVPRTSKDLRIKEVG 151 H + D S ++ E H CQV VP+ +K +R G Sbjct: 339 HTVSDDGLSGQS----AEQENHLTCDICQVTVPQFNKHMRTHHPG 379 >SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 909 Score = 28.3 bits (60), Expect = 5.7 Identities = 12/43 (27%), Positives = 19/43 (44%) Frame = -2 Query: 326 WDAWCVWQASGYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAK 198 W W AS + C H A H + +W +++ +L R K Sbjct: 329 WSETFHWSASCHGDECIHEMASHSLHPLHQWIIRLVTSLHRLK 371 >SB_14070| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 113 Score = 28.3 bits (60), Expect = 5.7 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = -3 Query: 289 VARVRIGQPIMSCALVTGGRHRSSRLCAVPSS--SSPDVKRSTYQRSGVSQSMNVMSLRS 116 + RVR+ + + SCA +T S+R A + ++ V RS+ + + + + S+RS Sbjct: 28 IRRVRLQRSMRSCAKLTKDDRYSTRTTAEEHTQLAACAVVRSSLKMIDIRRVLRQRSMRS 87 Query: 115 CVK 107 C K Sbjct: 88 CAK 90 >SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) Length = 726 Score = 27.9 bits (59), Expect = 7.5 Identities = 9/20 (45%), Positives = 10/20 (50%) Frame = -2 Query: 314 CVWQASGYCSTCSHWTAHHV 255 C W +G C C HW HV Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98 >SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) Length = 434 Score = 27.5 bits (58), Expect = 9.9 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%) Frame = -2 Query: 167 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 39 V K W T +E + LR R D CI+ Y+ ++GPL W Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,560,318 Number of Sequences: 59808 Number of extensions: 496041 Number of successful extensions: 1527 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1386 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1526 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1645141000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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