Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0460.Seq
(648 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49721-1|AAC16108.1| 218|Drosophila melanogaster QM homolog pro... 213 2e-55
AY070910-1|AAL48532.1| 218|Drosophila melanogaster RE02339p pro... 213 2e-55
AE014296-3758|AAF45440.2| 231|Drosophila melanogaster CG17521-P... 213 2e-55
AE014296-3757|AAG22453.3| 237|Drosophila melanogaster CG17521-P... 213 2e-55
BT003580-1|AAO39584.1| 197|Drosophila melanogaster LD24589p pro... 138 5e-33
AY069415-1|AAL39560.1| 269|Drosophila melanogaster LD11064p pro... 33 0.44
AJ318090-1|CAC41645.1| 672|Drosophila melanogaster nuclear RNA ... 33 0.44
AJ251947-1|CAB64382.2| 672|Drosophila melanogaster tip associat... 33 0.44
AE014298-1507|AAF47959.3| 672|Drosophila melanogaster CG1664-PA... 33 0.44
AE013599-129|AAF57296.3| 499|Drosophila melanogaster CG14471-PA... 29 5.4
AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB... 29 5.4
Y10229-1|CAA71278.1| 784|Drosophila melanogaster RAD54 protein. 28 9.5
AY069599-1|AAL39744.2| 788|Drosophila melanogaster LD35220p pro... 28 9.5
AF069780-1|AAC26857.1| 628|Drosophila melanogaster RAD54 DNA re... 28 9.5
AF069779-1|AAC24577.1| 784|Drosophila melanogaster Rad54 homolo... 28 9.5
AE014134-530|AAF51168.1| 784|Drosophila melanogaster CG3736-PA ... 28 9.5
>U49721-1|AAC16108.1| 218|Drosophila melanogaster QM homolog
protein.
Length = 218
Score = 213 bits (519), Expect = 2e-55
Identities = 98/121 (80%), Positives = 102/121 (84%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHL + CNKYL
Sbjct: 17 YPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYL 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM
Sbjct: 77 VKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 166 bits (404), Expect = 2e-41
Identities = 96/210 (45%), Positives = 115/210 (54%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + G + G +++ LVSDEY QLSSEALE
Sbjct: 7 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALE 66
Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
AGRIC K K PF + + + G
Sbjct: 67 AGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTV 126
Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
+ VRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ +E+LR+
Sbjct: 127 ARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRD 186
Query: 107 EGRLANDGCIVQYRPEHGPLDAWRKVQAEI 18
+ RL DGC V+YRPEHGP+ AW K Q ++
Sbjct: 187 DNRLEPDGCNVKYRPEHGPIAAWEKAQRDV 216
>AY070910-1|AAL48532.1| 218|Drosophila melanogaster RE02339p
protein.
Length = 218
Score = 213 bits (519), Expect = 2e-55
Identities = 98/121 (80%), Positives = 102/121 (84%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHL + CNKYL
Sbjct: 17 YPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYL 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM
Sbjct: 77 VKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 166 bits (404), Expect = 2e-41
Identities = 96/210 (45%), Positives = 115/210 (54%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + G + G +++ LVSDEY QLSSEALE
Sbjct: 7 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALE 66
Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
AGRIC K K PF + + + G
Sbjct: 67 AGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTV 126
Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
+ VRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ +E+LR+
Sbjct: 127 ARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRD 186
Query: 107 EGRLANDGCIVQYRPEHGPLDAWRKVQAEI 18
+ RL DGC V+YRPEHGP+ AW K Q ++
Sbjct: 187 DNRLEPDGCNVKYRPEHGPIAAWEKAQRDV 216
>AE014296-3758|AAF45440.2| 231|Drosophila melanogaster CG17521-PA,
isoform A protein.
Length = 231
Score = 213 bits (519), Expect = 2e-55
Identities = 98/121 (80%), Positives = 102/121 (84%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHL + CNKYL
Sbjct: 30 YPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYL 89
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM
Sbjct: 90 VKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 149
Query: 256 S 254
S
Sbjct: 150 S 150
Score = 166 bits (404), Expect = 2e-41
Identities = 96/210 (45%), Positives = 115/210 (54%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + G + G +++ LVSDEY QLSSEALE
Sbjct: 20 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALE 79
Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
AGRIC K K PF + + + G
Sbjct: 80 AGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTV 139
Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
+ VRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ +E+LR+
Sbjct: 140 ARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRD 199
Query: 107 EGRLANDGCIVQYRPEHGPLDAWRKVQAEI 18
+ RL DGC V+YRPEHGP+ AW K Q ++
Sbjct: 200 DNRLEPDGCNVKYRPEHGPIAAWEKAQRDV 229
>AE014296-3757|AAG22453.3| 237|Drosophila melanogaster CG17521-PB,
isoform B protein.
Length = 237
Score = 213 bits (519), Expect = 2e-55
Identities = 98/121 (80%), Positives = 102/121 (84%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHL + CNKYL
Sbjct: 36 YPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYL 95
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM
Sbjct: 96 VKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 155
Query: 256 S 254
S
Sbjct: 156 S 156
Score = 166 bits (404), Expect = 2e-41
Identities = 96/210 (45%), Positives = 115/210 (54%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + G + G +++ LVSDEY QLSSEALE
Sbjct: 26 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALE 85
Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
AGRIC K K PF + + + G
Sbjct: 86 AGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTV 145
Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
+ VRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ +E+LR+
Sbjct: 146 ARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRD 205
Query: 107 EGRLANDGCIVQYRPEHGPLDAWRKVQAEI 18
+ RL DGC V+YRPEHGP+ AW K Q ++
Sbjct: 206 DNRLEPDGCNVKYRPEHGPIAAWEKAQRDV 235
>BT003580-1|AAO39584.1| 197|Drosophila melanogaster LD24589p
protein.
Length = 197
Score = 138 bits (335), Expect = 5e-33
Identities = 60/79 (75%), Positives = 70/79 (88%)
Frame = -2
Query: 254 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 75
VRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ +E+LR++ RL DGC V
Sbjct: 117 VRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNV 176
Query: 74 QYRPEHGPLDAWRKVQAEI 18
+YRPEHGP+ AW K Q ++
Sbjct: 177 KYRPEHGPIAAWEKAQRDV 195
Score = 103 bits (246), Expect = 3e-22
Identities = 61/121 (50%), Positives = 68/121 (56%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHL + CNK +
Sbjct: 23 YPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNK-M 81
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
+ G D+ MR GAFGKPQGTVARVRIGQPIM
Sbjct: 82 LSCAGADRLQTGMR--------------------------GAFGKPQGTVARVRIGQPIM 115
Query: 256 S 254
S
Sbjct: 116 S 116
Score = 56.4 bits (130), Expect = 3e-08
Identities = 31/65 (47%), Positives = 36/65 (55%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
RCYRYCKNKP + G + G +++ LVSDEY QLSSEALE
Sbjct: 13 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQLSSEALE 72
Query: 467 AGRIC 453
AGRIC
Sbjct: 73 AGRIC 77
>AY069415-1|AAL39560.1| 269|Drosophila melanogaster LD11064p
protein.
Length = 269
Score = 32.7 bits (71), Expect = 0.44
Identities = 22/81 (27%), Positives = 30/81 (37%)
Frame = -3
Query: 349 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSPDVKRS 170
AGA G A G G VA + G P+ + A V G S P + K
Sbjct: 161 AGAAAGLQGRLNALGVATGPVA-ILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQ 219
Query: 169 TYQRSGVSQSMNVMSLRSCVK 107
+ MNV+ R C++
Sbjct: 220 MIEAMSAQSQMNVIWSRKCLE 240
>AJ318090-1|CAC41645.1| 672|Drosophila melanogaster nuclear RNA
export factor 1 (NXF1) protein.
Length = 672
Score = 32.7 bits (71), Expect = 0.44
Identities = 22/81 (27%), Positives = 30/81 (37%)
Frame = -3
Query: 349 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSPDVKRS 170
AGA G A G G VA + G P+ + A V G S P + K
Sbjct: 564 AGAAAGLQGRLNALGVATGPVA-ILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQ 622
Query: 169 TYQRSGVSQSMNVMSLRSCVK 107
+ MNV+ R C++
Sbjct: 623 MIEAMSAQSQMNVIWSRKCLE 643
>AJ251947-1|CAB64382.2| 672|Drosophila melanogaster tip associating
protein protein.
Length = 672
Score = 32.7 bits (71), Expect = 0.44
Identities = 22/81 (27%), Positives = 30/81 (37%)
Frame = -3
Query: 349 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSPDVKRS 170
AGA G A G G VA + G P+ + A V G S P + K
Sbjct: 564 AGAAAGLQGRLNALGVATGPVA-ILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQ 622
Query: 169 TYQRSGVSQSMNVMSLRSCVK 107
+ MNV+ R C++
Sbjct: 623 MIEAMSAQSQMNVIWSRKCLE 643
>AE014298-1507|AAF47959.3| 672|Drosophila melanogaster CG1664-PA
protein.
Length = 672
Score = 32.7 bits (71), Expect = 0.44
Identities = 22/81 (27%), Positives = 30/81 (37%)
Frame = -3
Query: 349 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSPDVKRS 170
AGA G A G G VA + G P+ + A V G S P + K
Sbjct: 564 AGAAAGLQGRLNALGVATGPVA-ILSGDPLAATAPVNSGSAAISTTAVAPGAQDESTKMQ 622
Query: 169 TYQRSGVSQSMNVMSLRSCVK 107
+ MNV+ R C++
Sbjct: 623 MIEAMSAQSQMNVIWSRKCLE 643
>AE013599-129|AAF57296.3| 499|Drosophila melanogaster CG14471-PA,
isoform A protein.
Length = 499
Score = 29.1 bits (62), Expect = 5.4
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 247 LVTGGRHRSSRLCAVPS-SSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCS 71
LV GGR SS +PS SS+P+ K + R V SL R+ SL AL
Sbjct: 300 LVGGGREVSSIPMPIPSPSSNPNSKPTPANRPIVGS--EAFSLLPTTARSTSLTETALAK 357
Query: 70 TA 65
TA
Sbjct: 358 TA 359
>AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB,
isoform B protein.
Length = 1209
Score = 29.1 bits (62), Expect = 5.4
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 247 LVTGGRHRSSRLCAVPS-SSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCS 71
LV GGR SS +PS SS+P+ K + R V SL R+ SL AL
Sbjct: 300 LVGGGREVSSIPMPIPSPSSNPNSKPTPANRPIVGS--EAFSLLPTTARSTSLTETALAK 357
Query: 70 TA 65
TA
Sbjct: 358 TA 359
>Y10229-1|CAA71278.1| 784|Drosophila melanogaster RAD54 protein.
Length = 784
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 504 GHKCTHSGKSSTVALFLPKSKIRILGSGTPRQN 602
GH+ +S + AL K+K R+L SGTP QN
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 331
>AY069599-1|AAL39744.2| 788|Drosophila melanogaster LD35220p
protein.
Length = 788
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 504 GHKCTHSGKSSTVALFLPKSKIRILGSGTPRQN 602
GH+ +S + AL K+K R+L SGTP QN
Sbjct: 303 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 335
>AF069780-1|AAC26857.1| 628|Drosophila melanogaster RAD54 DNA
repair protein protein.
Length = 628
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 504 GHKCTHSGKSSTVALFLPKSKIRILGSGTPRQN 602
GH+ +S + AL K+K R+L SGTP QN
Sbjct: 143 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 175
>AF069779-1|AAC24577.1| 784|Drosophila melanogaster Rad54 homolog
OKR protein.
Length = 784
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 504 GHKCTHSGKSSTVALFLPKSKIRILGSGTPRQN 602
GH+ +S + AL K+K R+L SGTP QN
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 331
>AE014134-530|AAF51168.1| 784|Drosophila melanogaster CG3736-PA
protein.
Length = 784
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 504 GHKCTHSGKSSTVALFLPKSKIRILGSGTPRQN 602
GH+ +S + AL K+K R+L SGTP QN
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQN 331
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,609,192
Number of Sequences: 53049
Number of extensions: 727682
Number of successful extensions: 2032
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2023
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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