Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0460.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   178   2e-45
Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical ...    28   6.6  
U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in ge...    27   8.7  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    27   8.7  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  178 bits (434), Expect = 2e-45
 Identities = 83/127 (65%), Positives = 91/127 (71%)
 Frame = -3

Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
           YPKSRFCRGVPD KIRIFDLG KRA VD FP CVH+        +           NKY+
Sbjct: 17  YPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEAARICANKYM 76

Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
           VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG  + 
Sbjct: 77  VKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILF 136

Query: 256 SCALVTG 236
           S  +  G
Sbjct: 137 SMRIKEG 143



 Score =  105 bits (251), Expect = 4e-23
 Identities = 69/203 (33%), Positives = 94/203 (46%)
 Frame = -2

Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRFG*EESDR*RLSTVRALVSDEYXQLSSEALE 468
           RCYRY KNKP  +     G   ++      G + ++         ++S+E   LSSEALE
Sbjct: 7   RCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALE 66

Query: 467 AGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQASGYC 288
           A RIC      K   K          PF        +    +            +  G  
Sbjct: 67  AARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLV 126

Query: 287 STCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLRE 108
           +          +R  +      IEA RRAKFKFPGRQ I  S+KWGFTK++R+++E++R 
Sbjct: 127 ARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRA 186

Query: 107 EGRLANDGCIVQYRPEHGPLDAW 39
           EGRL +DG  VQ + EHGPL  W
Sbjct: 187 EGRLRSDGVGVQLQREHGPLTKW 209


>Z47067-2|CAA87329.1|  498|Caenorhabditis elegans Hypothetical
           protein C43C3.2 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 301 PQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSS-SPDVKRS 170
           P+    R  +G   MS AL T  R   S L A+PSSS  PD + S
Sbjct: 397 PERKYTRNGVGGRQMSHALTTNTRPEYSELIAIPSSSCRPDSRVS 441


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 300 GLPNAPRIPVWSLSAPA 350
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099913-8|ABB51194.1|  301|Caenorhabditis elegans Hypothetical
           protein C29F9.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 149 FTKYERDEFEKLREEGRLANDGCIVQYR 66
           F K +RDEFE++R +  LA +  I  Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163


>U80954-3|AAK77630.1|  603|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform b protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +2

Query: 440 VLIASRYVLPPKPLSSAXHIRRTQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 598
           VL A RY++   P+S   +I+ T + A+   V+ R++   I+++ + ++ TP+
Sbjct: 332 VLKARRYIMDLLPISMCFNIKNTDM-AEPSRVSDRNIHMIIDESGIILKMTPS 383


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
           line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +2

Query: 440 VLIASRYVLPPKPLSSAXHIRRTQVHAQWKVVNGRSLLTQIEDTDLGIRYTPT 598
           VL A RY++   P+S   +I+ T + A+   V+ R++   I+++ + ++ TP+
Sbjct: 332 VLKARRYIMDLLPISMCFNIKNTDM-AEPSRVSDRNIHMIIDESGIILKMTPS 383


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,290,746
Number of Sequences: 27780
Number of extensions: 356474
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)