Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0460.Seq
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 177 4e-45
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 177 4e-45
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 177 5e-45
At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II... 31 0.87
At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II... 31 0.87
At4g17840.1 68417.m02661 expressed protein 29 3.5
At2g30040.1 68415.m03653 protein kinase family protein contains ... 29 3.5
At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /... 28 4.7
At5g58280.1 68418.m07296 transcriptional factor B3 family protei... 28 6.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 27 8.1
At4g13965.1 68417.m02160 F-box family protein contains F-box dom... 27 8.1
At1g07490.1 68414.m00802 expressed protein 27 8.1
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 177 bits (432), Expect = 4e-45
Identities = 80/121 (66%), Positives = 94/121 (77%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHL + + ACNKY+
Sbjct: 17 YPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++
Sbjct: 77 VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLL 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 91.5 bits (217), Expect = 4e-19
Identities = 71/203 (34%), Positives = 87/203 (42%), Gaps = 3/203 (1%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRF---G*EESDR*RLSTVRALVSDEYXQLSSE 477
RCYR K KP + G DP +R G + LVS E +SSE
Sbjct: 7 RCYRQIKGKPYPKSRYCRGVP---DPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSE 63
Query: 476 ALEAGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQAS 297
ALEA RI K K + PF + + +A
Sbjct: 64 ALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKAL 123
Query: 296 GYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEK 117
G C+ + VR D EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ K
Sbjct: 124 GTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTK 183
Query: 116 LREEGRLANDGCIVQYRPEHGPL 48
LR R+ DG ++ HGPL
Sbjct: 184 LRAMKRIVPDGVNAKFLSNHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 177 bits (432), Expect = 4e-45
Identities = 80/121 (66%), Positives = 94/121 (77%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHL + + ACNKY+
Sbjct: 17 YPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYM 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++
Sbjct: 77 VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLL 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 92.3 bits (219), Expect = 3e-19
Identities = 72/203 (35%), Positives = 89/203 (43%), Gaps = 3/203 (1%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRF---G*EESDR*RLSTVRALVSDEYXQLSSE 477
RCYR K KP + G DP +R G + LVS E +SSE
Sbjct: 7 RCYRQIKGKPYPKSRYCRGVP---DPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSE 63
Query: 476 ALEAGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQAS 297
ALEA RI K K + PF + + +A
Sbjct: 64 ALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKAL 123
Query: 296 GYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEK 117
G C+ + VR D EALRRAKFKFPGRQKI VS+KWGFTK+ R +F K
Sbjct: 124 GTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTK 183
Query: 116 LREEGRLANDGCIVQYRPEHGPL 48
LR+E R+ DG ++ HGPL
Sbjct: 184 LRQEKRVVPDGVNAKFLSCHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 177 bits (431), Expect = 5e-45
Identities = 80/121 (66%), Positives = 94/121 (77%)
Frame = -3
Query: 616 YPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLCPTNMXS*AQRLWRQDVSACNKYL 437
YPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHL + + ACNKY+
Sbjct: 17 YPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYM 76
Query: 436 VKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIM 257
VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++
Sbjct: 77 VKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLL 136
Query: 256 S 254
S
Sbjct: 137 S 137
Score = 91.5 bits (217), Expect = 4e-19
Identities = 71/203 (34%), Positives = 89/203 (43%), Gaps = 3/203 (1%)
Frame = -2
Query: 647 RCYRYCKNKPVSEIEVLSGCT*SQDPYLRF---G*EESDR*RLSTVRALVSDEYXQLSSE 477
RCYR K KP + G DP +R G + LVS E +SSE
Sbjct: 7 RCYRQIKGKPYPKSRYCRGVP---DPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSE 63
Query: 476 ALEAGRICLQ*VPRKELRKGSVPYPHETSPFPRYPHQ*NVIMRWS**APDWDAWCVWQAS 297
ALEA RI K K + PF + + +A
Sbjct: 64 ALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKAL 123
Query: 296 GYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEK 117
G C+ + VR D EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ K
Sbjct: 124 GTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTK 183
Query: 116 LREEGRLANDGCIVQYRPEHGPL 48
LR+E R+ DG ++ HGPL
Sbjct: 184 LRQEKRIVPDGVNAKFLSCHGPL 206
>At4g18010.2 68417.m02680 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 613
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 299 SGYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKF 195
S C CSH T+ H + R A V E +RR +F
Sbjct: 412 SRMCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRF 446
>At4g18010.1 68417.m02679 inositol polyphosphate 5-phosphatase II
(IP5PII) nearly identical to inositol polyphosphate
5-phosphatase II [Arabidopsis thaliana] GI:10444263
isoform contains an AT-acceptor splice site at intron 6
Length = 646
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 299 SGYCSTCSHWTAHHVVRSSDRWKAQVIEALRRAKF 195
S C CSH T+ H + R A V E +RR +F
Sbjct: 445 SRMCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRF 479
>At4g17840.1 68417.m02661 expressed protein
Length = 422
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -3
Query: 253 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 95
C+ +GG SS+L P+ S D+K+ + +R+ +++ LRS +K ++S
Sbjct: 24 CSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75
>At2g30040.1 68415.m03653 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 463
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 238 LSLERTT*WAVQCEHVLQYPEACQTHHAS 324
L +R+ W+ C+ +LQ+P CQ HH S
Sbjct: 251 LKRDRSQRWS--CDQLLQHPFLCQDHHDS 277
>At3g24040.1 68416.m03019 glycosyltransferase family 14 protein /
core-2/I-branching enzyme family protein contains Pfam
profile: PF02485 Core-2/I-Branching enzyme
Length = 417
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -2
Query: 317 WCVWQASGYCSTCSHWTAHHVVR---SSDRWKAQVIEALRRAKFK 192
WC+ +S S+CS W ++R SDR + +++E L F+
Sbjct: 366 WCLGDSSKNRSSCSVWGDSGILRPGSGSDRLERRIVELLSNDWFR 410
>At5g58280.1 68418.m07296 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 273
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -3
Query: 301 PQGTVARVRIGQPIMSCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 122
PQ + + R +PI L T RSSR+ V SS DV T + S + +S + +
Sbjct: 28 PQFQLLQQRNHKPIDKALLATAEPRRSSRVRTVISSYRDDVVVDTGRTSNLRRSRHSSTW 87
Query: 121 RSCVKR 104
+ + R
Sbjct: 88 ATYISR 93
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 451 CNKYLVKNCGKDQFHIRMRLHPFHVIRI 368
C K K C + F I HPFH +R+
Sbjct: 109 CEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At4g13965.1 68417.m02160 F-box family protein contains F-box domain
Pfam:PF00646
Length = 294
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -3
Query: 190 SPDVKRSTYQ-RSGVSQSMN-VMSLRSCVK-RAASLMTAALCSTARNMDLSTLGGRFRLR 20
S +VKR+ ++ V S++ ++ L C A L+ A R + L GGRF +
Sbjct: 71 SKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKLIGIAFACNLRKLVLEVDGGRFSIP 130
Query: 19 SSMYN 5
S+YN
Sbjct: 131 ESLYN 135
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 223 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 122
SS C+VPSSSS + RS+ ++ S + SL
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,747
Number of Sequences: 28952
Number of extensions: 335467
Number of successful extensions: 987
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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