Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0459.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.40
SB_34828| Best HMM Match : W2 (HMM E-Value=6.9) 31 0.40
SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5) 30 0.92
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 30 1.2
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 29 1.6
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 2.1
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33) 29 2.1
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 2.8
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 28 3.7
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 28 4.9
SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 27 6.5
SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9) 24 7.2
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 27 8.6
SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61) 27 8.6
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 27 8.6
SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5) 27 8.6
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 31.5 bits (68), Expect = 0.40
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 298
PA P +RP A P LP+ V R LP L VFPG++
Sbjct: 313 PATAPPSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355
>SB_34828| Best HMM Match : W2 (HMM E-Value=6.9)
Length = 184
Score = 31.5 bits (68), Expect = 0.40
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQP------IRRAPTVPAAPIPPQARP 394
N DP P+S P+P IRR P P PPQ+ P
Sbjct: 109 NNDPTLPTPPFSTPRPRPKAKRIRRLLPTPPPPTPPQSTP 148
>SB_43309| Best HMM Match : RBM1CTR (HMM E-Value=7.5)
Length = 130
Score = 30.3 bits (65), Expect = 0.92
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = -2
Query: 459 HPQPIRR----APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
HP P+RR P+ A+ IPP RP ++P++ P + H +LP RL +P
Sbjct: 27 HP-PVRRDHDSLPSENASTIPPITRPLTSRPIRG-QHPPVRRAHDSLPSERLDYP 79
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 30.3 bits (65), Expect = 0.92
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = -2
Query: 486 PVXKAXPYSHPQP-IRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPP 325
P + +S P P + T+P+ P+PP+A G++QP L P+A+++ PP
Sbjct: 988 PKLRKKHHSPPSPDLVFDTTLPSTPLPPKALKVLGESQPSTQRLPPKALKLLGESPP 1044
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 438 APTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
+P +P AP+ P P P +A+ P LPP
Sbjct: 217 SPHIPPAPLHPHIPPAPPNPSKAIATPNPPMPETPLPP 254
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQP 379
P + P P P P+ P P+ P+ RP +QP
Sbjct: 45 PPLREPPTPAPTPPPALPSTPTLPLAPRPRPTASQP 80
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPAAPIP-PQARPGQ 388
P K PY P P+R+ P + P P +RPGQ
Sbjct: 484 PQIKPMPYPVPVPVRQPPMIQRFYYPVPVSRPGQ 517
>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1041
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 465 YSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
Y+ P P AP P PP+ +QP QAV P
Sbjct: 486 YTQPSPPASAPVTPQQYQPPRHAVPTSQPYQAVQRP 521
>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
Length = 693
Score = 29.1 bits (62), Expect = 2.1
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = -2
Query: 498 GNQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQ----AQPLQAVLLPRAVQVHRTL 331
G +P + P S+P P VP P+PP A PG QP+Q LP + +
Sbjct: 33 GGFNPPPSSVPVSYPGPPPAMYAVPGMPMPP-AYPGMPTYPPQPMQ--FLPGTLP---GM 86
Query: 330 PPLRLVFPGVIIQA*TDFYXSLVKENMPLLRKHIRYSLPSP 208
PP + + QA T F V PL+ + + + SP
Sbjct: 87 PPPPMFAQMMAPQAMT-FQPMPVSATAPLVTQGLTQATSSP 126
>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 392
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 292 GVNRLLXKPGQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 158
G + L G YA+ +++ FLT VFN+T DL+ L
Sbjct: 191 GQDYLKGMAGAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = -2
Query: 498 GNQDPVXKAXPYSHPQPIRRAPTVP----AAPIPPQARPGQAQP 379
G Q P + + P P R AP P +AP PP AR G A P
Sbjct: 284 GIQPPPPPSRGAAPPPPSRGAPPPPPSRGSAPPPPPARMGTAPP 327
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 28.7 bits (61), Expect = 2.8
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -2
Query: 486 PVXKAXPYS-HPQPIRRAPTVP--AAPIPPQARPG--QAQPLQAVLLPRAVQVHRTLPPL 322
P KA P S P P R P+ P A PIPP +P ++P P + +PP
Sbjct: 1029 PKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPP 1088
Query: 321 R 319
R
Sbjct: 1089 R 1089
>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 294 QA*TDFYXSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 151
Q+ +Y VKE + H+ + P RC I+LN WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 28.3 bits (60), Expect = 3.7
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVL--LPRAVQVHRTLPPLRLV 313
P + P P P +P+ P P PP P +PL A L P + TLPP L
Sbjct: 207 PPPRPPPSPPPPPPPPSPSPPRPPPPPP--PSPPRPLAAKLPEPPPIPNMPPTLPPPTLG 264
Query: 312 F-PGVII--QA*TDFYXSLVKENMP 247
+ P + ++ T+F + EN P
Sbjct: 265 YLPTARLTRESVTEFRDRMYLENYP 289
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Frame = -2
Query: 468 PYSHPQPIRRAP-TVPAAPIPPQARPGQAQPLQA-----VLLPRAVQVHRTLPPLRLVFP 307
P + +P ++ P VP + PQA PG P+ A + P A+ + P ++F
Sbjct: 112 PENAARPAKKVPIAVPVMGVIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFL 171
Query: 306 GVIIQA*TDFYXSLVKENMP 247
+ T+ S++ P
Sbjct: 172 TNLPMETTELMLSMLFNQFP 191
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 27.9 bits (59), Expect = 4.9
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
P A P +P P PP A+P A P AV PR T PP V
Sbjct: 715 PAAAAAPQGYPPSSAPTGYQARGPAPPGAKPRVAAPYGAV--PRPGAPAATAPPGAPVGR 772
Query: 306 GVI 298
G++
Sbjct: 773 GIL 775
>SB_58406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/41 (43%), Positives = 21/41 (51%)
Frame = -2
Query: 426 PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPG 304
P PIP QA PGQA P + P VQ + + P FPG
Sbjct: 5 PMKPIPGQALPGQAIP--GMQGPYQVQPPQGVSPGMPGFPG 43
>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1271
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIP 409
PY HP+P AP P AP P
Sbjct: 157 PYYHPKPADPAPMQPPAPPP 176
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 441 RAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
R TVP P+PP P Q+ P +L+P + LPP
Sbjct: 629 RPTTVP--PLPPTPPPRQSTPPPLLLIPLLPLLTLPLPP 665
>SB_52556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 477 KAXPYSHPQP--IRRAPTVPAAPIPPQARPGQAQP 379
KA P + P+P + P PAAP PP P A P
Sbjct: 209 KATPVNPPEPDYLEPTPPPPAAPAPPPP-PAAAPP 242
>SB_25720| Best HMM Match : Enterotoxin_HS (HMM E-Value=1.9)
Length = 706
Score = 23.8 bits (49), Expect(2) = 7.2
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC 423
W Y N + +C K C+ C WNRCC
Sbjct: 306 WSAEERYNNSCQLGHCKK-ACIG--CPDWNRCC 335
Score = 21.8 bits (44), Expect(2) = 7.2
Identities = 5/9 (55%), Positives = 7/9 (77%)
Frame = +1
Query: 400 CLRWNRCCW 426
C WN+CC+
Sbjct: 346 CPSWNKCCY 354
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 437 HRQCQQHRFHLKHVRGKHN-HFRQFFYLGR 351
H Q QQH+FH H +N H+R F + R
Sbjct: 1043 HHQ-QQHQFHHHHHHTHYNYHYRHFLIIDR 1071
>SB_6424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = -2
Query: 417 PIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P P RPGQAQ L L +HR+L PL L
Sbjct: 40 PGPMARRPGQAQTLGT--LVEDAHMHRSLRPLAL 71
>SB_382| Best HMM Match : Extensin_2 (HMM E-Value=0.61)
Length = 314
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -2
Query: 465 YSHPQPI---RRAPTVP-AAPIPPQARPGQAQPLQAVLLP 358
++ PQP+ +P VP A+P PP ARP P + + P
Sbjct: 41 FTSPQPMPGRNSSPIVPRASPQPPTARPYGTSPGTSAMSP 80
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/68 (26%), Positives = 29/68 (42%)
Frame = -2
Query: 492 QDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 313
Q P A + Q +R+ PT P P P PG Q +++ H+ + R
Sbjct: 156 QTPQRIAPAPPNTQNMRQTPTPPMPPKSPHGSPG-LMAAQQNSGGQSMPQHQVMQMARQQ 214
Query: 312 FPGVIIQA 289
PG++ Q+
Sbjct: 215 MPGMVQQS 222
>SB_39018| Best HMM Match : Crystallin (HMM E-Value=8.5)
Length = 67
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 334 RPMYLNRPR*KNCLKW-LCLPRTCLRWNRCCWHCRC 438
R Y+ + K L + +CL T LR +R C HC C
Sbjct: 22 RQRYVTHDKRKALLSFTVCLCSTHLRSDRLCVHCPC 57
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPL---QAVLLPRAVQVHRTLPPLRLVFP 307
P +P+VP P PP +PG A + + + V+ + P RL P
Sbjct: 2311 PSTGSHSPSVPPPPPPPPEQPGDAMDIEDEEGQPSGSKILVNTPIAPTRLALP 2363
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,930,092
Number of Sequences: 59808
Number of extensions: 275831
Number of successful extensions: 993
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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