Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0459.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 31 0.35
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 31 0.35
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr... 31 0.35
U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein. 31 0.35
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 31 0.46
Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical pr... 30 0.81
Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 29 2.5
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 2.5
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 2.5
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 28 3.3
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 28 3.3
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 28 3.3
AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine r... 28 3.3
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 28 4.3
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p... 28 4.3
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 28 4.3
Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 27 5.7
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 27 5.7
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 27 5.7
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 27 5.7
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 27 5.7
AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical ... 27 5.7
AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein. 27 5.7
AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like ... 27 5.7
Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical pr... 27 10.0
X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein. 27 10.0
U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of l... 27 10.0
U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of l... 27 10.0
U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of l... 27 10.0
U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer ... 27 10.0
U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer ... 27 10.0
U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer ... 27 10.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 27 10.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 27 10.0
AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein. 27 10.0
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 31.5 bits (68), Expect = 0.35
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -2
Query: 492 QDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLV 313
Q PV +A P +++AP + A PP QAQ QA P A Q+ PP +V
Sbjct: 85 QKPVAQAPPAQAKPTVQQAPIL-VAQAPPNPPAPQAQQHQAPAPPAARQIPVQQPPKPVV 143
Score = 31.5 bits (68), Expect = 0.35
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 492 QDPVXKAXPYSHPQPI-RRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
Q PV +A P +PI ++AP V AP PP+ + QAQP+Q P V + P
Sbjct: 240 QQPVVQAPP----KPIVQQAPVVQQAP-PPKQQQAQAQPVQQPPNPAPVVQQASAP 290
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 11/49 (22%)
Frame = -2
Query: 486 PVXKAXPYSHPQ---PIRRAPTVPA--------APIPPQARPGQAQPLQ 373
PV +A P PQ P+++AP PA AP PP+ P QA P+Q
Sbjct: 290 PVQQAPPKPVPQQTPPVQQAPPKPAVQQAPTRAAPAPPKPAPQQAPPVQ 338
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = -2
Query: 492 QDPVXKAXPYSHP-----QPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLP 328
Q PV + P + P Q AP A PI Q +P Q Q QA + + V + P
Sbjct: 19 QVPVIQQAPPNSPAQQQQQAQAHAPPAQAKPIVQQTQPAQKQQAQAPPAAQQIPVVQQAP 78
Query: 327 P 325
P
Sbjct: 79 P 79
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 492 QDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 373
Q+P A + +++AP P PP+ P QA P++
Sbjct: 339 QNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVR 378
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -2
Query: 492 QDPVXKAXPYSHPQP------IRRAPTVPAAPIPPQARPGQAQPL 376
Q PV + P S PQ +++AP V A P A+P Q QP+
Sbjct: 199 QAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPVQQQPV 243
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 13/51 (25%)
Frame = -2
Query: 486 PVXKAXPYSHPQ---PIRRAPTVPA---AP-------IPPQARPGQAQPLQ 373
PV +A P PQ P+R+ P +PA AP PP+ P QA P+Q
Sbjct: 361 PVQQAPPKPTPQQAPPVRQNPPMPAVQQAPSSQQATQAPPKPAPQQAPPVQ 411
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 322
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 592 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
protein R08B4.1a protein.
Length = 1137
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 322
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 592 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 651
>U61288-1|AAB17543.1| 790|Caenorhabditis elegans CE protein.
Length = 790
Score = 31.5 bits (68), Expect = 0.35
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQ--ARPGQAQPLQAVLLPRAVQVHRTLPPL 322
NQ P P + QP+ P AP+P Q A+P Q P A Q+ RT P+
Sbjct: 245 NQQPFFNQQPMFNQQPMYLQPAFNQAPLPYQYPAQPSQFNPFLASFRRFKRQIGRTPYPI 304
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 31.1 bits (67), Expect = 0.46
Identities = 21/57 (36%), Positives = 22/57 (38%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
N PV P +PQ AP P AP P A P A P Q P H PP
Sbjct: 90 NAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPA-PYQQQPPPPPPPPHYPPPP 145
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPL 376
P +PQ AP P AP P A P A PL
Sbjct: 54 PAPYPQQAVPAPAPPPAPYPQHAVPAPAPPL 84
>Z75529-5|CAA99784.1| 610|Caenorhabditis elegans Hypothetical
protein C44H9.6 protein.
Length = 610
Score = 30.3 bits (65), Expect = 0.81
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Frame = +1
Query: 325 WRKRPMYLNRPR*KNCLKWLCLPRTCLRWNRCC----WHCRCS 441
W+KRP Y R R ++ K LP + + C W C C+
Sbjct: 567 WKKRPYYRRRQRKRSAQKEKSLPESFQAMGKSCAKMVWRCICN 609
>Z68752-7|CAA92982.2| 693|Caenorhabditis elegans Hypothetical
protein T12G3.1 protein.
Length = 693
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
N P+ +A P S P P +PT+ +P A+ + P LP
Sbjct: 277 NPAPMPQAPPVSTPVPFPPSPTIGNGAVPKPAQEPRIPPSPTSALP 322
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.7 bits (61), Expect = 2.5
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVL-LPRAVQVHRTLPPLRLVFP 307
P+P R+ + AP+ P ARP P A L L A + + P R + P
Sbjct: 725 PKPPRKKKPIAEAPLRPPARPAPIVPTSAGLSLVLAASLPTSSTPSRFLNP 775
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 86 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 141
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFP 307
P P P+P R P +PA+P PP RP ++P+ + L Q + L P V P
Sbjct: 308 PAKPTPPPPPPKPTIRPPPIPASP-PP--RPPASEPV-GIPLYSEKQHQQQLRPTTAVSP 363
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P P VP +PPQ RP Q P+Q P
Sbjct: 348 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 380
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P P VP +PPQ RP Q P+Q P
Sbjct: 445 PPPTLPPVQVPIQTLPPQTRPPQLPPVQITQPP 477
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARP--GQAQPLQAVLLPRAVQVHRTLPPLRL 316
P P+ RA P AP RP G A+P A L P Q R PP R+
Sbjct: 126 PMPVSRAGGPPRAPTSMGGRPMTGMARPPTAGLRPVTQQGLRA-PPSRM 173
>AF022971-13|AAG23979.1| 325|Caenorhabditis elegans Serpentine
receptor, class h protein247 protein.
Length = 325
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 6 YVYYLGNTITFFFFPVQNRGFLCMLIKVKQR 98
++ + N ITFF PV G C+L K +R
Sbjct: 15 FLISISNVITFFEIPVCTFGAYCILFKTPER 45
>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 474 AXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
A P+S PQP+ R P++ I P P + LP V V PP
Sbjct: 646 AGPFSSPQPVPRFNGPPSSFILPSIYPPPPPGVSLNQLPPRVPVPIIRPP 695
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 27.9 bits (59), Expect = 4.3
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTVPA-APIPPQA-RPGQAQPL------QAVLLPRAVQVHRTL 331
P P P+P+ AP +PA AP P A RP A P ++ PR V +
Sbjct: 135 PAFAPAPILAPRPVLAAPAIPAFAPAPLLAPRPVLAAPAIPAFAPAPIIAPRPVLAAPAI 194
Query: 330 PPLRLVFPGVI 298
P P I
Sbjct: 195 PAFAPAVPAAI 205
>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
protein T11G6.5 protein.
Length = 1406
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -2
Query: 474 AXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
A P+S PQP+ R P++ I P P + LP V V PP
Sbjct: 646 AGPFSSPQPVPRFNGPPSSFILPSIYPPPPPGVSLNQLPPRVPVPIIRPP 695
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -2
Query: 435 PTVP-AAPIPPQARPGQAQP 379
P++P P+PPQ PGQA P
Sbjct: 406 PSLPDMGPLPPQTAPGQAAP 425
>Z92807-2|CAD21652.1| 689|Caenorhabditis elegans Hypothetical
protein K11D9.1b protein.
Length = 689
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPT--VPAAPIPPQAR 397
PV A P P P RRAP+ AAP P R
Sbjct: 127 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 158
>Z92807-1|CAB07264.1| 747|Caenorhabditis elegans Hypothetical
protein K11D9.1a protein.
Length = 747
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPT--VPAAPIPPQAR 397
PV A P P P RRAP+ AAP P R
Sbjct: 185 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 216
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 27.5 bits (58), Expect = 5.7
Identities = 18/51 (35%), Positives = 20/51 (39%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRL 316
PY P P +P AP PP R PL V + TLPP L
Sbjct: 736 PYFIPPPQGYVGPLPPAPPPPTFRVAPQVPLPVVQTTQTAP-KPTLPPTTL 785
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARP 394
PY P P R AP + + PQ RP
Sbjct: 220 PYIEPTPARPAPYIEPSTAKPQPRP 244
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = -2
Query: 450 PIRRAPTVPAAPIPPQ---ARPGQ--AQPLQAVLLPRAVQVHRTLP 328
P +AP P AP+ P+ ARP +P AV RA Q+ + P
Sbjct: 267 PSPKAPVAPVAPVKPKPFVARPAPNFGKPRAAVAPARAPQITQRAP 312
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 468 PYSH-PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
P +H P P+ PT P P P A P QA A
Sbjct: 265 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 298
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 27.5 bits (58), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = -2
Query: 468 PYSH-PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
P +H P P+ PT P P P A P QA A
Sbjct: 625 PLAHLPAPVAIYPTPPPPPAPAPAAPQQASAAPA 658
>AC006666-4|AAK21415.1| 109|Caenorhabditis elegans Hypothetical
protein H31G24.1 protein.
Length = 109
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
PQP ++P + A P PP P Q P QA
Sbjct: 72 PQPYAQSP-IAAVPPPPPPPPPQPAPAQA 99
>AB039949-1|BAC06512.1| 747|Caenorhabditis elegans kinesin protein.
Length = 747
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPT--VPAAPIPPQAR 397
PV A P P P RRAP+ AAP P R
Sbjct: 185 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 216
>AB017164-1|BAA32661.1| 689|Caenorhabditis elegans Kinesin like
protein (klp-7) protein.
Length = 689
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPT--VPAAPIPPQAR 397
PV A P P P RRAP+ AAP P R
Sbjct: 127 PVRMAPPSEKPLPTRRAPSPKEDAAPAPKSTR 158
>Z77133-3|CAB00868.2| 149|Caenorhabditis elegans Hypothetical
protein K03A11.5 protein.
Length = 149
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -3
Query: 314 CFQESSFRREQTFTQAWSRKICLCFENIFDIPYHLRKNI 198
C Q RE F+ A C+C N D PY + KN+
Sbjct: 15 CNQLKCKNREPDFSNA--NTTCVCHHNPSDYPYDICKNL 51
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = -2
Query: 462 SHPQPIRRAPTVPAAP---IPPQARPGQ 388
S+P P +P+ PA P +PP A+P Q
Sbjct: 381 SYPSPSYPSPSYPAEPAYSVPPPAKPEQ 408
>Z66495-4|CAA91271.1| 954|Caenorhabditis elegans Hypothetical
protein C36A4.5 protein.
Length = 954
Score = 26.6 bits (56), Expect = 10.0
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -2
Query: 450 PIRRAPTVPAAPIPPQARPGQAQPLQAVLLPR-AVQVHRTLP 328
PIR +AP PP+ P +A +A+ + A +V R P
Sbjct: 389 PIRAPIPAKSAPAPPRGAPAKAAKAEAIAQKKVAGKVQRAAP 430
>X89223-1|CAA61507.1| 582|Caenorhabditis elegans sli-1 protein.
Length = 582
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 444 RRAPTVPAAPIPPQARPGQAQP 379
+RAP++ A P+PP+ + QP
Sbjct: 549 QRAPSIQAPPLPPRLSASEHQP 570
>U58730-5|AAK84546.1| 582|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform a protein.
Length = 582
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 444 RRAPTVPAAPIPPQARPGQAQP 379
+RAP++ A P+PP+ + QP
Sbjct: 549 QRAPSIQAPPLPPRLSASEHQP 570
>U58730-4|AAK84547.1| 565|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform b protein.
Length = 565
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 444 RRAPTVPAAPIPPQARPGQAQP 379
+RAP++ A P+PP+ + QP
Sbjct: 532 QRAPSIQAPPLPPRLSASEHQP 553
>U58730-3|AAT92069.1| 523|Caenorhabditis elegans Suppressor of
lineage defect protein1, isoform c protein.
Length = 523
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 444 RRAPTVPAAPIPPQARPGQAQP 379
+RAP++ A P+PP+ + QP
Sbjct: 490 QRAPSIQAPPLPPRLSASEHQP 511
>U50197-7|AAM54189.1| 796|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform c protein.
Length = 796
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 465 YSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
++HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 314 FAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 360
>U50197-6|AAK68348.1| 892|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform a protein.
Length = 892
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 465 YSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
++HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 410 FAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 456
>U50197-5|AAM54188.1| 864|Caenorhabditis elegans Abnormal dauer
formation protein3, isoform b protein.
Length = 864
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 465 YSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
++HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 382 FAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 428
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2
Query: 474 AXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
A P S PQ +AP V AAP P QA P QA
Sbjct: 590 ARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 26.6 bits (56), Expect = 10.0
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = -2
Query: 474 AXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQA 370
A P S PQ +AP V AAP P QA P QA
Sbjct: 590 ARPPSTPQA-PQAPPVQAAPAPVQAPQAPQAPPQA 623
>AF005205-1|AAB61748.1| 796|Caenorhabditis elegans DAF-3 protein.
Length = 796
Score = 26.6 bits (56), Expect = 10.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 465 YSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
++HP P +AP P P P PL +P+ Q+ + PPL
Sbjct: 314 FAHPLP-HQAPHNPGVSHPYSIAPQTHYPLNMNPIPQMPQMPQMPPPL 360
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,316,763
Number of Sequences: 27780
Number of extensions: 210872
Number of successful extensions: 827
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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