Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0459.Seq
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family... 31 0.43
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 30 1.00
At1g13050.1 68414.m01513 expressed protein 30 1.00
At1g26150.1 68414.m03192 protein kinase family protein similar t... 29 1.3
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 29 1.7
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 29 2.3
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 29 2.3
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 3.0
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 28 3.0
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 4.0
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 5.3
At5g08520.1 68418.m01011 myb family transcription factor contain... 27 5.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 5.3
At5g65410.1 68418.m08226 zinc finger homeobox family protein / Z... 27 7.0
At5g38560.1 68418.m04662 protein kinase family protein contains ... 27 7.0
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 27 7.0
At2g35350.1 68415.m04334 protein phosphatase 2C family protein /... 27 7.0
At5g61090.1 68418.m07665 proline-rich family protein contains pr... 27 9.3
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 27 9.3
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont... 27 9.3
At5g04500.1 68418.m00449 glycosyltransferase family protein 47 l... 27 9.3
At5g02400.1 68418.m00163 protein phosphatase 2C family protein /... 27 9.3
At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family... 27 9.3
>At2g21140.1 68415.m02508 hydroxyproline-rich glycoprotein family
protein identical to proline-rich protein 2 [Arabidopsis
thaliana] gi|7620011|gb|AAF64549
Length = 321
Score = 31.1 bits (67), Expect = 0.43
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -2
Query: 465 YSHPQPIRRAPTV-PAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPL 322
Y P PI + P V P P PP+ +P + P V +T PPL
Sbjct: 216 YKPPVPIYKPPVVIPKKPCPPKIHKPIYKPPVPIYKPPVVIPKKTFPPL 264
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 29.9 bits (64), Expect = 1.00
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = -2
Query: 486 PVXKAXPYSHPQPIRRAPTV--PAAPIPPQARPGQAQPLQAV--LLPRAVQVHRTLPPLR 319
PV P P PI R P + P P P PG P+ LLP LPP+
Sbjct: 109 PVVYPPPIVRPPPITRPPIIIPPIQPPPVTTPPGLLPPITTPPGLLPPVTTPPGLLPPVT 168
Query: 318 LVFPGVI 298
PG++
Sbjct: 169 TP-PGLL 174
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 29.9 bits (64), Expect = 1.00
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQ 373
P S P P+R P P+PP+ P A+PLQ
Sbjct: 68 PSSRPLPLR-----PEEPLPPRHNPNSARPLQ 94
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -2
Query: 495 NQDPVXKAXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPL-QAVLLPRAVQVHRTLPP 325
N P K P SH P R P+ PA+ IPP R + P + P + H + PP
Sbjct: 165 NPLPPPKLVPPSHSPP-RHLPSPPASEIPPPPRHLPSPPASERPSTPPSDSEHPSPPP 221
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTL 331
P HPQ ++P +P+ P+++ L+ + V+ HR L
Sbjct: 47 PLFHPQSPPEPKSLPLSPLSPKSKEEPESQTMTPLMSKHVKTHRNL 92
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPG-QAQPLQAVLLPRAVQVHRTLPPLRLVFPG 304
P P R +P P PP P A+ L P V+ LPP L+F G
Sbjct: 58 PPPAMRRRVLPRPPPPPPPLPMFDAEVLCCCYPPTRVRREAPLPPPPLIFVG 109
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPP 325
P P P+RR +P P PP R P + R V PP
Sbjct: 27 PPPPPPPMRRRAPLPPPPPPPMRRRAPLPPPPPPAMRRRVLPRPPPPP 74
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPA--APIPPQARPGQAQPL 376
P+ HP P ++P P AP+ P A+P P+
Sbjct: 60 PHPHPHPPAKSPVKPPVKAPVSPPAKPPVKPPV 92
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = -2
Query: 468 PYSHPQ-PIRRAPTVPAAPIPPQAR------PGQAQPLQAVLLPRAVQVHRTLPPLRL 316
P S P P+ +P P P+PP P + A++LPR+ + H T P L L
Sbjct: 47 PISPPFFPLESSPPSPPPPLPPTPPTTFAVFPTFPANISALVLPRSSKPHHTSPTLLL 104
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQ 346
P+ HP AP P P+PP P Q+ P L R+ Q
Sbjct: 19 PHLHPPS---APLPPPPPLPPPPPPRQSHPESPNLYGRSTQ 56
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 465 YSHPQPIRRAPTVPAAPIPPQARP 394
YS P P+ P P P+PP P
Sbjct: 809 YSPPPPVFSPPPKPVTPLPPATSP 832
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -2
Query: 459 HPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQV--HRTLPP 325
HPQ + P +P +PP + PL LPR +Q+ H +PP
Sbjct: 580 HPQQMLPMPNMPHHQLPPSSH----MPLHPHHLPRPMQMPPHGHMPP 622
>At5g08520.1 68418.m01011 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 298
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 468 PYSHPQPIRRAPTVPAAPIPPQARPGQAQPL--QAVLLPRAVQVHR 337
P + P P A V AAP+P PG A + +PR HR
Sbjct: 253 PVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR 298
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/49 (32%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Frame = -2
Query: 498 GNQDPVXKAXPYSHPQPIRR--APTVPAAPIPPQARPGQAQPLQAVLLP 358
G P P S P P +PT P +P PP P P V P
Sbjct: 70 GGYTPPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 118
>At5g65410.1 68418.m08226 zinc finger homeobox family protein /
ZF-HD homeobox family protein similar to hypothetical
proteins (GP|4220524)(GP|3184285|)(Arabidopsis); ZP-HD
homeobox family protein GP|13374061 (Flaveria
bidentis);GP:5091602 {Oryza sativa}
Length = 279
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Frame = -2
Query: 477 KAXPYSHPQPIRRAPTVPA-------APIPPQARPGQAQPLQAVLLP 358
K PY H P + P P AP+ + P QA PLQ L P
Sbjct: 123 KELPYFHHAPPQHQPPPPPPGFYRLPAPVSYRPPPSQAPPLQLALPP 169
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIP--PQARPGQAQP 379
P P++ PT P+AP P P P Q+ P
Sbjct: 22 PPPLQTQPTTPSAPPPVTPPPSPPQSPP 49
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains Pfam
profile PF00730: HhH-GPD superfamily base excision DNA
repair protein
Length = 1729
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLP 358
P P R+ T P+PP++ P A P+ + LP
Sbjct: 1402 PAPEERSLTSATIPVPPESYPPVAIPMIELPLP 1434
>At2g35350.1 68415.m04334 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 783
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 144 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAYFP 260
+L+HY+ +VL++D L + + N+E V A FP
Sbjct: 683 SLRHYRLTENDQFMVLSSDGLYQYLSNVEVVSLAMEKFP 721
>At5g61090.1 68418.m07665 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420;
common family members: At4g18570, At3g25690, At4g04980
[Arabidopsis thaliana]
Length = 344
Score = 26.6 bits (56), Expect = 9.3
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = -2
Query: 468 PYSHPQ-PIRRAPT-VPAAPIPPQARPGQAQPLQAVLLP---RAVQVHRTLPPLR 319
P S P PI P VPA P P RP A+P + P R + +TL P R
Sbjct: 104 PRSVPACPIPEIPRPVPARPTPETPRPVTARPTPEIPRPVPARPISEVQTLVPTR 158
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 456 PQPIRRAPTVPAAPI-PPQARPGQAQPLQAVLLP-RAVQVHRTLPPLRL 316
P P + PT+P PI PP +P P++ +P V+ + PP++L
Sbjct: 55 PTPSYKPPTLPTTPIKPPTTKP----PVKPPTIPVTPVKPPVSTPPIKL 99
>At5g07150.1 68418.m00815 leucine-rich repeat family protein
contains weak similarity to LRR receptor-like protein
kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
contains Pfam PF00560 domain Leucine Rich Repeat
Length = 553
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -2
Query: 474 AXPYSHPQPIRRAPTVPAAPIPPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVII 295
A P + Q I VP P P Q P Q P Q +P AV ++ + GV++
Sbjct: 181 ASPPTETQVIPNPSPVP--PPPAQPPPAQTPPPQLSEVPHAVNKKKSHKSKMYIIVGVLV 238
>At5g04500.1 68418.m00449 glycosyltransferase family protein 47 low
similarity to Exostosin-like 2, Homo sapiens
[SP|Q9UBQ6], EXTL2, Mus musculus [GI:10443633]
Length = 765
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 386 HNHFRQFFYLGRFKYIGRFLHFV*CF 309
HNH ++ Y+ + RFL F CF
Sbjct: 23 HNHHHRYKYISNYGVGRRFLFFASCF 48
>At5g02400.1 68418.m00163 protein phosphatase 2C family protein /
PP2C family protein similar to protein phosphatase-2c
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 674
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 144 NLKHYKEYSKSCLVVLNTDILTEMVRNIEYVFEAKAY 254
+L H+K S+ ++L++D L E N E +FE +++
Sbjct: 575 SLCHHKLTSRDKFLILSSDGLYEYFSNQEAIFEVESF 611
>At1g13900.1 68414.m01631 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 656
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 46 SRYKTGAFYVC*LKLNKEKVIVKIVRSH 129
S Y+TG F L NKEK+ V V +H
Sbjct: 540 SMYRTGEFGYTRLVANKEKLTVSFVGNH 567
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,507,679
Number of Sequences: 28952
Number of extensions: 189323
Number of successful extensions: 660
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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