Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0458.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-spec...    33   3.9  
UniRef50_Q4YYA3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q8IJF2 Cluster: Putative uncharacterized protein; n=4; ...    33   6.7  

>UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-specific
            protein, putative; n=4; Plasmodium|Rep: U5 small nuclear
            ribonucleoprotein-specific protein, putative - Plasmodium
            vivax
          Length = 2675

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +2

Query: 29   KHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIX*KHYYENETLQIFSQ*VQNQNLFI 199
            K N + + Y  KI  SSYY++D     M+ K   +H  E E L++F    + +N+F+
Sbjct: 1284 KLNTVSSTYVGKI--SSYYYVDYRSIDMYNKKLNRHTNETELLKLFGMSDEFKNIFV 1338


>UniRef50_Q4YYA3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 79

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 14  FYFCIKHNLLYTNYYVKILFSSYYF 88
           FYFC+  NL   NYY+ I+   +YF
Sbjct: 29  FYFCVFLNLFCFNYYISIVLRVFYF 53


>UniRef50_Q8IJF2 Cluster: Putative uncharacterized protein; n=4;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1333

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = +3

Query: 216  MHVQKCL*NIHKYNLNNNLCQMAY*PFLNNS*K*HGLFDYSHIIKI 353
            +H+  CL  I+KYN+NNNL Q     ++ N  K   LF++ H IK+
Sbjct: 1188 IHLPNCLNYINKYNINNNLYQEQ--KYIYN--KFINLFEHIHNIKL 1229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,217,169
Number of Sequences: 1657284
Number of extensions: 7913650
Number of successful extensions: 14122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14117
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)