Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0458.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    23   1.5  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   3.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.9  
AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    21   7.9  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 59  HNNLYIVNCV*YRNKIF 9
           HN + + NCV Y N+IF
Sbjct: 139 HNLIRLKNCVIYFNRIF 155


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 131 KHYYENETLQIFSQ*VQNQNL 193
           +HYY  +TLQ  +    N NL
Sbjct: 108 EHYYNQKTLQANNNDASNGNL 128


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 26  IKHNLLYTNYYVKILFSSYY 85
           +KHNL   +  VK + + YY
Sbjct: 116 LKHNLFLLDNIVKPIIAFYY 135


>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 129 KNIIMKMKHYKFFLNKYKIKT 191
           K ++ K +H K F+N+  ++T
Sbjct: 172 KILVEKYRHQKNFINESNVET 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,699
Number of Sequences: 336
Number of extensions: 2540
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)