Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0458.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0062 - 4814139-4814176,4814571-4815627                           28   6.5  
03_05_1016 + 29726949-29727503,29728863-29729504                       27   8.6  

>10_02_0062 - 4814139-4814176,4814571-4815627
          Length = 364

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 342 CENNQTGHVIFMNCLEM-VNMPFDISCYSNYIYGYFINIFA 223
           C  N+T H++F   +++  + PF +S   N + G   N+ A
Sbjct: 142 CSTNETHHILFEQSIKLQPSGPFTLSANDNSLVGVGQNVIA 182


>03_05_1016 + 29726949-29727503,29728863-29729504
          Length = 398

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 492 NKWLMLVSSQCMSCSNIXSYF*YSAFXISQSFILA 388
           N+W +LVS  C+   N  + + Y     SQSF++A
Sbjct: 211 NEWFVLVSESCIPIFNFNTTYRYLQ-NSSQSFVMA 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,436,968
Number of Sequences: 37544
Number of extensions: 167165
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)