Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0458.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC146825-1|AAI46826.1|  517|Homo sapiens FOXN4 protein protein.        29   9.5  
AF425596-1|AAL23949.1|  448|Homo sapiens forkhead/winged helix t...    29   9.5  

>BC146825-1|AAI46826.1|  517|Homo sapiens FOXN4 protein protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 KPFYYYACLICMC-KNVYKISINII*ITTYVKWHINHF*T 303
           KP Y Y+CLI M  KN    S+ +  I +++K H  +F T
Sbjct: 193 KPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKT 232


>AF425596-1|AAL23949.1|  448|Homo sapiens forkhead/winged helix
           transcription factor FOXN4 protein.
          Length = 448

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 KPFYYYACLICMC-KNVYKISINII*ITTYVKWHINHF*T 303
           KP Y Y+CLI M  KN    S+ +  I +++K H  +F T
Sbjct: 153 KPIYSYSCLIAMALKNSKTGSLPVSEIYSFMKEHFPYFKT 192


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,465,367
Number of Sequences: 237096
Number of extensions: 1101381
Number of successful extensions: 1320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)