Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0458.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
 Frame = +2

Query: 20  FCIKHNLLYTN------YYVKILFSSYYFI 91
           FC  H+L Y N      YY+KILF+S Y +
Sbjct: 191 FCHAHSLYYLNPYGRLSYYLKILFTSLYVL 220


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 108 QCLQKSXKNIIMKMKHYKFFLNKYKIKTFLLLCMFNMHVQKCL*NIHKYNLNNN 269
           +C+ KS ++  MKMK     L    IK  +L  +    ++  + N H Y L  N
Sbjct: 94  KCISKSTESNSMKMKIRTVLLVFVFIKLCILFTVLQETIESIMANDHPYLLGTN 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,686,152
Number of Sequences: 27780
Number of extensions: 202165
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)