Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0458.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   4.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    22   5.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   5.3  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  SSKKKIIFLHNNLYIVNCV*YRNKIFYN 3
           S ++KII   +N YI N   Y N   YN
Sbjct: 76  SKERKIISSLSNNYISNISNYNNNNNYN 103


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  SSKKKIIFLHNNLYIVNCV*YRNKIFYN 3
           S ++KII   +N YI N   Y N   YN
Sbjct: 314 SKERKIISSLSNNYISNISNYNNNNNYN 341


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 162 FFLNKYKIKTFLLLCMFNMHVQKCL*NIHKYNLNNNL 272
           +FLN YK K   +    ++H+Q     I +Y L + +
Sbjct: 666 YFLNDYKHKDVDVTLPLDLHIQNA---IREYGLGSTV 699


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 86  SSKKKIIFLHNNLYIVNCV*YRNKIFYN 3
           S ++KII   +N YI N   Y N   YN
Sbjct: 76  SKERKIISSLSNNYISNISNYNNDNNYN 103


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 240 NIHKYNLNNNLCQMAY 287
           N +KYN NNN C+  Y
Sbjct: 94  NNYKYNYNNN-CKKLY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,997
Number of Sequences: 438
Number of extensions: 2868
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)