Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1AES0 Cluster: Protective antigen 4D8; n=16; Eumetazoa...    52   2e-05
UniRef50_Q9VS59 Cluster: CG8580-PA, isoform A; n=5; Diptera|Rep:...    48   3e-04
UniRef50_Q6Z237 Cluster: Putative uncharacterized protein OSJNBb...    35   1.5  
UniRef50_Q0V6F8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q7W8F8 Cluster: Putative acyl-CoA carboxylase; n=3; Bor...    33   6.0  
UniRef50_Q963L2 Cluster: Homeodomain transcription factor Gsx; n...    33   6.0  
UniRef50_Q03053 Cluster: Genome polyprotein [Contains: Capsid pr...    33   6.0  
UniRef50_Q6LUB7 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q1AES0 Cluster: Protective antigen 4D8; n=16;
           Eumetazoa|Rep: Protective antigen 4D8 - Ixodes ricinus
           (Sheep tick)
          Length = 184

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 25/60 (41%), Positives = 36/60 (60%)
 Frame = +2

Query: 266 KRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQL 445
           KRRRC P + + + +P  +  +  PS FGE    P K+T E +A  I +E++RL RR QL
Sbjct: 24  KRRRCMPLSVTQAATPPTRAHQINPSPFGE---VPPKLTSEEIAANIREEMRRLQRRKQL 80


>UniRef50_Q9VS59 Cluster: CG8580-PA, isoform A; n=5; Diptera|Rep:
           CG8580-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 201

 Score = 47.6 bits (108), Expect = 3e-04
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 21/87 (24%)
 Frame = +2

Query: 260 PTKRRRCSPFAAS-------------PSTSPGLKTSES--------KPSSFGESVSAPVK 376
           P KRRRC+PF  +             PSTS GL  + S        +PS F ES  A  K
Sbjct: 19  PPKRRRCNPFGQAGSNAGPASPSRDGPSTSAGLPHTPSNRFAKDSTEPSPFSESSLA--K 76

Query: 377 ITPERMAQEIYDEIKRLHRRGQLRLAN 457
           ++P++MA+ + +EIKRLH+R QL + +
Sbjct: 77  MSPDKMAESLCNEIKRLHKRKQLPITS 103


>UniRef50_Q6Z237 Cluster: Putative uncharacterized protein
           OSJNBb0092C08.12; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBb0092C08.12 - Oryza sativa subsp. japonica (Rice)
          Length = 150

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
 Frame = +2

Query: 191 WA*KENGVCYIKKKSGLGV*GELPTKRRRCSPFAASPSTSPGLKTSESKPS-SFGESVSA 367
           WA K+  +C         V G   T  RR +P +  P   P        PS S   S SA
Sbjct: 6   WAVKKGLLCGRTHSGRSSVTGSAATAHRRLAPHSPPPPPPPPPPPRRDPPSLSRSPSASA 65

Query: 368 PVKITPERMAQEIYDEIKRLHRRGQLRL 451
                P R    +   + RLH+   LRL
Sbjct: 66  DALSFPSRSRHPVRRRVVRLHQLSVLRL 93


>UniRef50_Q0V6F8 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 953

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 25/54 (46%), Positives = 29/54 (53%)
 Frame = +2

Query: 287 FAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQLR 448
           FA  PS SP    S   P S  E VSAPV ITP+  AQE  DE +R    G ++
Sbjct: 639 FAVDPSPSP---FSGGPPRSIAE-VSAPV-ITPDATAQESLDETRRRGSSGTIQ 687


>UniRef50_Q7W8F8 Cluster: Putative acyl-CoA carboxylase; n=3;
           Bordetella|Rep: Putative acyl-CoA carboxylase -
           Bordetella parapertussis
          Length = 511

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 438 DSCAWPTALLHHAHHQVDPKETGSRLINQLMAH 536
           D+ AW  A L+  H  +DP+ET + LI  L  H
Sbjct: 459 DTSAWGLAALYETHAVIDPRETRAHLIRLLDIH 491


>UniRef50_Q963L2 Cluster: Homeodomain transcription factor Gsx; n=3;
           Protostomia|Rep: Homeodomain transcription factor Gsx -
           Phascolion strombus
          Length = 191

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 281 SPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQ 442
           +P  AS   +  +  S  K S+   SV  PV +TP    QE Y  +  +  RG+
Sbjct: 64  TPVTASVPVTSAVLPSLYKSSALSRSVGGPVSVTPAPRVQETYRNLPMVMSRGR 117


>UniRef50_Q03053 Cluster: Genome polyprotein [Contains: Capsid protein
            VP4 (P1A) (Virion protein 4); Capsid protein VP2 (P1B)
            (Virion protein 2); Capsid protein VP3 (P1C) (Virion
            protein 3); Capsid protein VP1 (P1D) (Virion protein 1);
            Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
            protein P2B; Core protein P2C; Core protein P3A;
            Genome-linked protein VPg (P3B); Picornain 3C (EC
            3.4.22.28) (Protease 3C) (P3C); RNA-directed RNA
            polymerase (EC 2.7.7.48) (P3D)]; n=1099;
            Picornaviridae|Rep: Genome polyprotein [Contains: Capsid
            protein VP4 (P1A) (Virion protein 4); Capsid protein VP2
            (P1B) (Virion protein 2); Capsid protein VP3 (P1C)
            (Virion protein 3); Capsid protein VP1 (P1D) (Virion
            protein 1); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome-linked protein VPg (P3B); Picornain 3C (EC
            3.4.22.28) (Protease 3C) (P3C); RNA-directed RNA
            polymerase (EC 2.7.7.48) (P3D)] - Coxsackievirus B5
            (strain Peterborough / 1954/UK/85)
          Length = 2185

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
 Frame = -2

Query: 638  TQHGKAXFL---DPWSIRLPDHSEP--CLKVNSARVGHVVGHELIDEPGTSLLRIHLMMS 474
            T++G+   L   D W++ LP H++P   + +N   VG V   EL+D+ GT+L    L +S
Sbjct: 1560 TEYGEFTMLGIYDRWAV-LPRHAKPGPTILMNDQEVGVVDAKELVDKDGTNLELTLLKLS 1618

Query: 473  MMQQSR 456
              ++ R
Sbjct: 1619 RNEKFR 1624


>UniRef50_Q6LUB7 Cluster: Putative uncharacterized protein; n=1;
           Photobacterium profundum|Rep: Putative uncharacterized
           protein - Photobacterium profundum (Photobacterium sp.
           (strain SS9))
          Length = 616

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 527 ELIDEPGTSLLRIHLMMSMMQQSRWPG 447
           +L+ + G SL+R HL + M  + RWPG
Sbjct: 325 DLLSKNGQSLIRKHLFLDMTPKGRWPG 351


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,626,336
Number of Sequences: 1657284
Number of extensions: 13833815
Number of successful extensions: 38536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 36506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38486
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)