Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    26   5.4  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   7.1  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   9.4  

>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 450 WPTALLHHAHHQVDPKETGSRLINQLMAHNVPDSCTIHF 566
           +PTA +   H  +DP+  G+ L+   M H+  +S   +F
Sbjct: 42  FPTAEVRLDHFSIDPRLPGTSLLQIKMPHSPRNSAMGNF 80


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 453 PTALLHHAHHQVDPKETGS 509
           PTA   HAH  +DP E+G+
Sbjct: 223 PTATSWHAHKFLDPAESGA 241


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/31 (22%), Positives = 19/31 (61%)
 Frame = +1

Query: 268  EKKMFTICSKSKHKSWVKNIRIETIFIWRIR 360
            +KK+ T+  + K + W+ + R   I+++ ++
Sbjct: 1546 QKKLVTLAEQDKKRVWICSFRTNEIYLYGLK 1576


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 326  SESKPSSFGESVSAPVKITPERMAQEIYDEIKR 424
            S  +PS++   V A + +   R A EI +++KR
Sbjct: 1177 SGKEPSTYENMVRAYLSVNDGRKAMEIVEQLKR 1209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,155
Number of Sequences: 5004
Number of extensions: 60075
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)