Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0456.Seq
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0674 + 19788198-19789817 30 1.4
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 30 1.8
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 4.2
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978... 28 5.6
03_02_0354 + 7760124-7761407,7762802-7762858 28 5.6
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 5.6
09_06_0053 - 20537433-20537833,20537910-20538456 28 7.4
02_02_0559 - 11483798-11483988,11484076-11484163,11484288-114844... 28 7.4
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 27 9.7
04_03_0264 - 13619329-13621708,13621742-13621830 27 9.7
01_06_0781 + 31962661-31963089,31963174-31963228,31964310-319645... 27 9.7
>10_08_0674 + 19788198-19789817
Length = 539
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Frame = -3
Query: 442 LSTSMQSFNLIINLLCHAFWGNFHRCTNGFSK*R--------WFRF*CF*PRTCAWTCCK 287
L+++ + NL+I LL + HR T GFS R W R +CA C +
Sbjct: 236 LASAWANLNLVIFLLAFVYVSGVHRDTGGFSLPRKMFKDVDGWVRLVRLAAESCASVCLE 295
Query: 286 W 284
W
Sbjct: 296 W 296
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 551 VHYSLLNXVPNDLGAECSMD 610
VH+SLL+ V +D+G CS+D
Sbjct: 297 VHFSLLSKVQHDIGDSCSLD 316
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 232 FLFNVAHAIFFLRPTKSSGLRICQRICFNY---EYKKMKNNIKP 110
F F ++ A+FFL+ K + R NY EYK M N + P
Sbjct: 250 FFFVISWAVFFLQFWKRKNSAVLARWGINYSFSEYKTMGNELDP 293
>03_02_0603 -
9786761-9786856,9787189-9787269,9787366-9787431,
9788056-9788610,9788693-9788857,9789110-9789217,
9789905-9790109,9790347-9790434,9791590-9792109
Length = 627
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +2
Query: 389 RMAQEIYDEIKRLHRRGQLRL 451
++AQEIY+EIK+ + G L+L
Sbjct: 332 KLAQEIYEEIKKKEQNGLLKL 352
>03_02_0354 + 7760124-7761407,7762802-7762858
Length = 446
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 329 ESKPSSFGESVSAPVKITPERMAQEI 406
E + GES APVK P R+ QE+
Sbjct: 19 EEESKGKGESTGAPVKYLPARLRQEV 44
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 453 PTALLHHAHHQVDPKETGSR 512
P+ LLHH HH++ P+ SR
Sbjct: 4 PSLLLHHHHHRLSPRFAPSR 23
>09_06_0053 - 20537433-20537833,20537910-20538456
Length = 315
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 260 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSA 367
PTKR R P A +P+TS G + + F VS+
Sbjct: 165 PTKRPRARPSATTPTTSSGDQQMVTVAERFPREVSS 200
>02_02_0559 -
11483798-11483988,11484076-11484163,11484288-11484405,
11484489-11484637,11484921-11484974,11485065-11485160,
11486092-11486242,11486300-11486382,11486577-11486695,
11487111-11487237
Length = 391
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -2
Query: 596 RLPDHSEPCLKVNSARVGHVVGHELIDEPGTSLLR-IHLMMSMMQQSRW 453
RL + +P K+ GH+V HE E SL+ I S Q W
Sbjct: 272 RLAEKLQPAAKLVELHGGHLVSHERTAEVNMSLMEMIKASKSNTDQGEW 320
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 453 PTALLHHAHHQVDPKETGSRLINQLMAHNVP 545
P +H H Q P+ GSR ++ L N P
Sbjct: 6 PQGPVHMTHRQATPRRRGSRALHDLRLPNPP 36
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 408 MMRLNDCIDVDSCAWPTALLHHA 476
++ ++D IDVD+CA+PT +A
Sbjct: 291 VIHMDDVIDVDNCAFPTVCGEYA 313
>01_06_0781 +
31962661-31963089,31963174-31963228,31964310-31964557,
31965080-31965281,31965793-31965912,31965976-31966100,
31966182-31966288,31966726-31966792
Length = 450
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +2
Query: 293 ASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQLRLAN 457
ASP SPGL S+ SS ++S+P + P ++ R RRG L + +
Sbjct: 78 ASPYPSPGLPPLPSRRSSSPFAISSPSPLRPAAAMPPA--DLPRPPRRGPLAIVD 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,856,626
Number of Sequences: 37544
Number of extensions: 367766
Number of successful extensions: 999
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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