Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.81 
SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)                27   9.9  
SB_11325| Best HMM Match : Gurmarin (HMM E-Value=3.3)                  27   9.9  
SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_13598| Best HMM Match : Gurmarin (HMM E-Value=3.3)                  27   9.9  

>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = +2

Query: 266 KRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQL 445
           KRRRC P A S S S    +S +  S F E      + + E+++  ++ E KRL RR  L
Sbjct: 179 KRRRCIPMATSSSPS----SSSNTDSPFLEITP---RYSQEQLSTNLHMEWKRLQRRKHL 231

Query: 446 R 448
           +
Sbjct: 232 K 232


>SB_58663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 224  KKKSGLGV*GEL-PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 391
            K+KSG  +  E+ P K+R+  P AAS  T+P  ++++ +  +F    S P K   +R
Sbjct: 908  KQKSGNSLAFEITPPKKRKAEPKAAS-DTTPRRESTKKETVAFTIENSPPKKCKVQR 963


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 320 KTSESKPSSFGESVSAPVKITPERMAQEIYDEIKR 424
           +T ESK S    S+S PVK+  E+    +Y+ +K+
Sbjct: 335 ETKESKISRSPISISVPVKVGDEKTKGYVYNVLKK 369


>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
          Length = 263

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 399 KRFMMRLNDCIDVDSCAWPTALLHHA 476
           K F+     C+D+D C +P     HA
Sbjct: 142 KGFVREPEGCVDIDECVYPRVCSEHA 167


>SB_11325| Best HMM Match : Gurmarin (HMM E-Value=3.3)
          Length = 194

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 220 VAHAIFFLRPTKSSGLRICQRICFNYEYKKMKNNIKPHTGNTRKKYTIRFQV-TVKSDVL 44
           V H    L     SGL +C  I  +   K+    +K  T N  + ++ + +V   KSDVL
Sbjct: 128 VTHQAMLLLKVMVSGLVVCPIIEISANQKRAWIALKQKTANHLEGFSKKLEVLNPKSDVL 187

Query: 43  NLKRLF 26
            + + F
Sbjct: 188 AVLKFF 193


>SB_54678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 221 CSTRHFLFTPNEILWFTYMSTNLF*LRI 138
           C +++F+FT N I+W+  +   LF L I
Sbjct: 5   CLSKYFIFTLNFIVWYMVVLAVLFTLEI 32


>SB_13598| Best HMM Match : Gurmarin (HMM E-Value=3.3)
          Length = 194

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -3

Query: 220 VAHAIFFLRPTKSSGLRICQRICFNYEYKKMKNNIKPHTGNTRKKYTIRFQV-TVKSDVL 44
           V H    L     SGL +C  I  +   K+    +K  T N  + ++ + +V   KSDVL
Sbjct: 128 VTHQAMLLLKVMVSGLVVCPIIEISANQKRAWIALKQKTANHLEGFSKKLEVLNPKSDVL 187

Query: 43  NLKRLF 26
            + + F
Sbjct: 188 AVLKFF 193


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,856,922
Number of Sequences: 59808
Number of extensions: 432601
Number of successful extensions: 1247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)