Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ487959-1|CAD32306.1|  537|Homo sapiens LGI1-like protein 3 pro...    32   2.0  
AJ487519-1|CAD31787.1|  537|Homo sapiens leucine-rich glioma ina...    32   2.0  
AF467954-1|AAM49552.1|  537|Homo sapiens LGI4 protein.                 32   2.0  
BC087848-1|AAH87848.1|  261|Homo sapiens LGI4 protein protein.         31   2.7  
AY358121-1|AAQ88488.1|  261|Homo sapiens LGI4 protein.                 31   2.7  

>AJ487959-1|CAD32306.1|  537|Homo sapiens LGI1-like protein 3
           protein.
          Length = 537

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 393 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPKETGSRLINQLMAHNVPDS 551
           W  ++M  +N  +   +CA P +L H   H +DPK    R I       V +S
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPKTFKCRAIELSWFQTVGES 220


>AJ487519-1|CAD31787.1|  537|Homo sapiens leucine-rich glioma
           inactivated protein 4 protein.
          Length = 537

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 393 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPKETGSRLINQLMAHNVPDS 551
           W  ++M  +N  +   +CA P +L H   H +DPK    R I       V +S
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPKTFKCRAIELSWFQTVGES 220


>AF467954-1|AAM49552.1|  537|Homo sapiens LGI4 protein.
          Length = 537

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +3

Query: 393 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPKETGSRLINQLMAHNVPDS 551
           W  ++M  +N  +   +CA P +L H   H +DPK    R I       V +S
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPKTFKCRAIELSWFQTVGES 220


>BC087848-1|AAH87848.1|  261|Homo sapiens LGI4 protein protein.
          Length = 261

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 393 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPKETGSRLI 518
           W  ++M  +N  +   +CA P +L H   H +DPK    R I
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPKTFKCRAI 209


>AY358121-1|AAQ88488.1|  261|Homo sapiens LGI4 protein.
          Length = 261

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 393 WHKRFMMRLNDCIDVDSCAWPTALLHHAHHQVDPKETGSRLI 518
           W  ++M  +N  +   +CA P +L H   H +DPK    R I
Sbjct: 168 WLLQWMPTVNASVGTGACAGPASLSHMQLHHLDPKTFKCRAI 209


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,710,852
Number of Sequences: 237096
Number of extensions: 2074181
Number of successful extensions: 7428
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7425
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)