Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095189-1|AAM12282.1|  201|Drosophila melanogaster LD26817p pro...    48   1e-05
AE014296-1249|AAN12062.1|  201|Drosophila melanogaster CG8580-PB...    48   1e-05
AE014296-1248|AAF50569.1|  201|Drosophila melanogaster CG8580-PA...    48   1e-05
AE013599-3678|AAF47055.3|  181|Drosophila melanogaster CG13560-P...    32   0.77 
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    31   1.0  
AL031128-1|CAA20006.1| 5327|Drosophila melanogaster EG:49E4.1 pr...    29   5.4  
AE014298-205|AAF45622.3| 5412|Drosophila melanogaster CG3064-PB ...    29   5.4  

>AY095189-1|AAM12282.1|  201|Drosophila melanogaster LD26817p
           protein.
          Length = 201

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 21/87 (24%)
 Frame = +2

Query: 260 PTKRRRCSPFAAS-------------PSTSPGLKTSES--------KPSSFGESVSAPVK 376
           P KRRRC+PF  +             PSTS GL  + S        +PS F ES  A  K
Sbjct: 19  PPKRRRCNPFGQAGSNAGPASPSRDGPSTSAGLPHTPSNRFAKDSTEPSPFSESSLA--K 76

Query: 377 ITPERMAQEIYDEIKRLHRRGQLRLAN 457
           ++P++MA+ + +EIKRLH+R QL + +
Sbjct: 77  MSPDKMAESLCNEIKRLHKRKQLPITS 103



 Score = 31.9 bits (69), Expect = 0.77
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 207 MACATLKRNLDWES 248
           MACATLKR LDWES
Sbjct: 1   MACATLKRALDWES 14


>AE014296-1249|AAN12062.1|  201|Drosophila melanogaster CG8580-PB,
           isoform B protein.
          Length = 201

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 21/87 (24%)
 Frame = +2

Query: 260 PTKRRRCSPFAAS-------------PSTSPGLKTSES--------KPSSFGESVSAPVK 376
           P KRRRC+PF  +             PSTS GL  + S        +PS F ES  A  K
Sbjct: 19  PPKRRRCNPFGQAGSNAGPASPSRDGPSTSAGLPHTPSNRFAKDSTEPSPFSESSLA--K 76

Query: 377 ITPERMAQEIYDEIKRLHRRGQLRLAN 457
           ++P++MA+ + +EIKRLH+R QL + +
Sbjct: 77  MSPDKMAESLCNEIKRLHKRKQLPITS 103



 Score = 31.9 bits (69), Expect = 0.77
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 207 MACATLKRNLDWES 248
           MACATLKR LDWES
Sbjct: 1   MACATLKRALDWES 14


>AE014296-1248|AAF50569.1|  201|Drosophila melanogaster CG8580-PA,
           isoform A protein.
          Length = 201

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 34/87 (39%), Positives = 48/87 (55%), Gaps = 21/87 (24%)
 Frame = +2

Query: 260 PTKRRRCSPFAAS-------------PSTSPGLKTSES--------KPSSFGESVSAPVK 376
           P KRRRC+PF  +             PSTS GL  + S        +PS F ES  A  K
Sbjct: 19  PPKRRRCNPFGQAGSNAGPASPSRDGPSTSAGLPHTPSNRFAKDSTEPSPFSESSLA--K 76

Query: 377 ITPERMAQEIYDEIKRLHRRGQLRLAN 457
           ++P++MA+ + +EIKRLH+R QL + +
Sbjct: 77  MSPDKMAESLCNEIKRLHKRKQLPITS 103



 Score = 31.9 bits (69), Expect = 0.77
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = +3

Query: 207 MACATLKRNLDWES 248
           MACATLKR LDWES
Sbjct: 1   MACATLKRALDWES 14


>AE013599-3678|AAF47055.3|  181|Drosophila melanogaster CG13560-PA
           protein.
          Length = 181

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 22/56 (39%), Positives = 28/56 (50%)
 Frame = +2

Query: 281 SPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRLHRRGQLR 448
           SP   SPSTSP   TS S  SS G S S+    + +R  +E     +R  RR + R
Sbjct: 115 SPSTTSPSTSPTTSTSPSDSSSSGSSSSSS---SSKRNRKERRRRYRRRQRRQERR 167


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = -3

Query: 139  YKKMKNNIKPH----TGNTRKKYTIRFQVTVKSDVL 44
            Y+  KNN+K H    T  ++  YTI F +T ++DVL
Sbjct: 938  YEHTKNNLKTHNFIFTDGSKINYTISFAITTETDVL 973


>AL031128-1|CAA20006.1| 5327|Drosophila melanogaster EG:49E4.1
            protein.
          Length = 5327

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 308  SPGLKTSESKPSSFGESVSAPVKITPERMAQ 400
            SP   T  S+P+S GE+ S+P++  P+  A+
Sbjct: 2505 SPVASTEISRPASAGETASSPIEEAPKDFAE 2535


>AE014298-205|AAF45622.3| 5412|Drosophila melanogaster CG3064-PB
            protein.
          Length = 5412

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 308  SPGLKTSESKPSSFGESVSAPVKITPERMAQ 400
            SP   T  S+P+S GE+ S+P++  P+  A+
Sbjct: 2698 SPVASTEISRPASAGETASSPIEEAPKDFAE 2728


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,095,843
Number of Sequences: 53049
Number of extensions: 649056
Number of successful extensions: 1970
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)