Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...    32   0.40 
Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    29   2.8  
Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z74045-3|CAA98551.1|  165|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U10401-2|AAA19057.2|  386|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 450 WPTALLHHAHHQVDPKETGSRLINQLMAHNVP 545
           WP  +  H+H+Q    + GS L+++L AH  P
Sbjct: 153 WPADIARHSHNQPSKPQPGSVLLSKLAAHLKP 184


>Z78059-3|CAB01486.3|  345|Caenorhabditis elegans Hypothetical
           protein C34B4.2a protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 275 RCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKIT 382
           RC P A+ P+    ++  E+K +S G S + P++ T
Sbjct: 224 RCPPQASIPAYYARVRMEETKAASSGNSTAGPIRAT 259


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +2

Query: 272 RRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 391
           RR SPF++S ST+P +K+   + S F ES+   V  +PER
Sbjct: 220 RRRSPFSSSKSTAP-IKSRHYR-SRFSESLEDNVFRSPER 257


>Z92838-5|CAB07404.2|  578|Caenorhabditis elegans Hypothetical
           protein T03D8.6 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = +2

Query: 338 PSSFGES---VSAPVKITPERMAQEIYDEIKRLHR 433
           PSSFG +   VSA  K+ PE    +IY++ K LH+
Sbjct: 285 PSSFGVTQLIVSAMSKLFPEGHKDDIYNDPKVLHK 319


>Z74045-3|CAA98551.1|  165|Caenorhabditis elegans Hypothetical
           protein T27F2.4 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = +2

Query: 284 PFAASPSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYD-----EIKRLHRR 436
           PF +S S   G  T+ S   S  ES +AP KI   R  QEI D       K+ HRR
Sbjct: 48  PFESSASL--GTSTTSSSRCSSTESSAAPGKIRRGRPQQEIADGQDAHSQKKRHRR 101


>Z74039-7|CAA98506.1|  290|Caenorhabditis elegans Hypothetical
           protein K03B8.7 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 142 EYKKMKNNIKPHTGNTRKKYTIRFQVTVKSDVLN 41
           E ++MKN I   + N  +K  IRF   ++SD +N
Sbjct: 110 EVQRMKNEIMEISTNKTRKSEIRFSPPIESDRVN 143


>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
           protein ZK593.5 protein.
          Length = 1326

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 260 PTKRRRCSPFAASPSTSPGLKTSESKPSSFGESVSAPVKITPER 391
           P ++    P  AS +T+P  K S SKP     + S P ++TP++
Sbjct: 175 PRRQSLAPPKKASTTTAPVSKPSLSKPRQ-SLAPSKPAEVTPQK 217


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 299 PSTSPGLKTSESKPSSFGESVSAPVKITPERMAQEIYDEIKRL 427
           P + P L TS  KPS   +  +AP+K  P    QE+  E ++L
Sbjct: 477 PVSVPELLTSTKKPSQPAKVPAAPIK-APRLSDQELESESQKL 518


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 DFVGRKKKMACATLKRNLDWESKANY 260
           DFVGR K  A  TLK     E++ANY
Sbjct: 72  DFVGRAKYDAWNTLKGQTQDEARANY 97


>U10401-2|AAA19057.2|  386|Caenorhabditis elegans Hypothetical
           protein T20B12.4 protein.
          Length = 386

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +1

Query: 184 ISLGVKRKWRVLH*KEIWIGSLRRITYKEKKMFTICSKSKHKSWVKNIRIETIFIWRIR* 363
           I +G  + W+ L+ ++  I  L+ + Y  +   +ICSKS HK     + I  ++++ I  
Sbjct: 23  IYIGGFKYWKFLN-EDCKIEVLKYLDYCSRCQLSICSKSDHKL----VSITPLYVYEIEI 77

Query: 364 CTCENYPRTHGTRD 405
              E    +  T+D
Sbjct: 78  SDNERSLHSTSTKD 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,870
Number of Sequences: 27780
Number of extensions: 340411
Number of successful extensions: 1128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)