Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0456.Seq
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa...    29   3.5  
At5g17770.1 68418.m02084 NADH-cytochrome b5 reductase identical ...    29   3.5  
At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase fami...    28   4.7  
At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase fa...    28   4.7  
At3g43760.1 68416.m04675 hypothetical protein                          27   8.1  
At2g37080.1 68415.m04550 myosin heavy chain-related low similari...    27   8.1  

>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
           family protein predicted proteins, Arabidopsis thaliana
           ; contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 411

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +2

Query: 284 PFAASPSTSPGLKTSESKPSSFGESVSAPVKITP 385
           P  ASP TSP  K   S PSS    +S  V  TP
Sbjct: 98  PLVASPITSPYWKRCLSLPSSNSAKLSLVVSTTP 131


>At5g17770.1 68418.m02084 NADH-cytochrome b5 reductase identical to
           NADH-cytochrome b5 reductase [Arabidopsis thaliana]
           GI:4240116
          Length = 281

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = -3

Query: 256 FALDSQSRFLFNVAHAIFFLRPTKSS--GLRICQRICFNYEYKKMKNNIKPHTGNTRKKY 83
           F L  + +   NVA  +F L PT +S  GL I Q I    +  + ++ IKP+T  T    
Sbjct: 50  FKLVKRHQLSHNVAKFVFEL-PTSTSVLGLPIGQHISCRGKDGQGEDVIKPYTPTTLDSD 108

Query: 82  TIRFQVTVK 56
             RF++ +K
Sbjct: 109 VGRFELVIK 117


>At2g01460.1 68415.m00069 phosphoribulokinase/uridine kinase family
           protein contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 723

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 551 VHYSLLNXVPNDLGAECSMD 610
           VH+SLL+ V  D+G  CS+D
Sbjct: 194 VHFSLLSKVRYDIGDSCSLD 213


>At1g05630.1 68414.m00584 endonuclease/exonuclease/phosphatase
           family protein similar to inositol 1,4,5-trisphosphate
           5-phosphatase (GI:4688596) [Arabidopsis thaliana]
          Length = 861

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +2

Query: 191 WA*KENGVCYIKKK----SGLGV*GELPTKRRRCSPFAASPSTSP 313
           WA +ENG+ +   +    +G G+ G++P      +PF  S +TSP
Sbjct: 165 WAGQENGIRFWNLEDAYEAGCGIGGQVPRGDEDTAPFHESVTTSP 209


>At3g43760.1 68416.m04675 hypothetical protein
          Length = 280

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 208 WRVL-H*KEIWIGSLRRITYKEKKMFTICSKSKHKSWV 318
           WR+L H   +W+  + R   K++  +T+   +   SW+
Sbjct: 40  WRILSHGDSLWVKWIERFLLKKEPFWTVKENTSAGSWI 77


>At2g37080.1 68415.m04550 myosin heavy chain-related low similarity
           to myosin heavy chain [Rana catesbeiana] GI:4249701
          Length = 583

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
 Frame = +2

Query: 254 ELPTKRRRCSPFAASPSTSPGLKTSESKP-SSFGESVSAPVKITPERMA 397
           E+P K+   SP A++P T+  LKTSES P SS    +  P   +P+ +A
Sbjct: 12  EVPQKK---SP-ASTPKTARKLKTSESDPVSSPNTKIRTPKTQSPKVVA 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,076
Number of Sequences: 28952
Number of extensions: 307689
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)