Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0455.Seq
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-spec...    34   2.5  
UniRef50_Q4YYA3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_A5K7K9 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_A5K663 Cluster: U5 small nuclear ribonucleoprotein-specific
            protein, putative; n=4; Plasmodium|Rep: U5 small nuclear
            ribonucleoprotein-specific protein, putative - Plasmodium
            vivax
          Length = 2675

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +2

Query: 38   KHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQ*VQNQNLFI 208
            K N + + Y  KI  SSYY++D     M+ K + +H  E E L++F    + +N+F+
Sbjct: 1284 KLNTVSSTYVGKI--SSYYYVDYRSIDMYNKKLNRHTNETELLKLFGMSDEFKNIFV 1338


>UniRef50_Q4YYA3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 79

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  FYFCIKHNLLYTNYYVKILFSSYYF 97
           FYFC+  NL   NYY+ I+   +YF
Sbjct: 29  FYFCVFLNLFCFNYYISIVLRVFYF 53


>UniRef50_A5K7K9 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 2581

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +2

Query: 14   CKRFYFCIKHNLLYTNYYVKILFSSYYFIDLSL*AMFTKIV*KHYYENETLQIFSQ*VQN 193
            C  +   IK N  +T+    ILF+ Y      L A   KI+ K+ Y++E   + ++  QN
Sbjct: 1193 CNSYVSFIKPNPFFTDV---ILFACYRKYIYLLNAQKKKIIKKYSYDSELKNLSAEWSQN 1249

Query: 194  QNLFIIMH 217
              LFI+ H
Sbjct: 1250 GYLFIVSH 1257


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 481,760,633
Number of Sequences: 1657284
Number of extensions: 8823875
Number of successful extensions: 15688
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15677
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)