Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0455.Seq
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-3|AAC46700.2|  125|Caenorhabditis elegans Hypothetical pr...    32   0.30 
AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    28   6.5  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    28   6.5  

>U23170-3|AAC46700.2|  125|Caenorhabditis elegans Hypothetical
           protein F58F12.2 protein.
          Length = 125

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -2

Query: 274 LFKFIFMIFYKHFCTCILNMHNNKKVLILYLLRKNL 167
           +FKF+F +F+K F   + N H   + L+L+ LRK L
Sbjct: 20  IFKFLFKLFFK-FVNYLWNSHKFHEQLVLHNLRKRL 54


>AC024753-8|AAF60455.1|  174|Caenorhabditis elegans Hypothetical
           protein Y23H5B.8 protein.
          Length = 174

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 81  FLLTTLLIYHYRQCLQKSYKNIIMKMKHYKFFLNKYKIKT 200
           FLL+T  ++      Q +Y+N + K+   K  LN  K++T
Sbjct: 7   FLLSTFFVFSIVSGQQTNYENCLTKLNKMKNILNNLKLET 46


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 6/30 (20%)
 Frame = +2

Query: 29  FCIKHNLLYTN------YYVKILFSSYYFI 100
           FC  H+L Y N      YY+KILF+S Y +
Sbjct: 191 FCHAHSLYYLNPYGRLSYYLKILFTSLYVL 220


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 5   FLNCKRFYFCIKHNLLYTNYYVKILFSSYYFI-DLSL*AMFTKIV*KHYYENETLQIFSQ 181
           FLN KRF  C+    L   ++++   S + FI   S   +++  +  H   N  + + S 
Sbjct: 28  FLNLKRFLICLNVKFLGKQHFIRFSISPHPFIRSNSSKYIYSPFIFCHRTANSCVAVCSL 87

Query: 182 *VQNQNLFIIMH 217
                +L +++H
Sbjct: 88  FTCLHSLVLLLH 99


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +2

Query: 5   FLNCKRFYFCIKHNLLYTNYYVKILFSSYYFI-DLSL*AMFTKIV*KHYYENETLQIFSQ 181
           FLN KRF  C+    L   ++++   S + FI   S   +++  +  H   N  + + S 
Sbjct: 28  FLNLKRFLICLNVKFLGKQHFIRFSISPHPFIRSNSSKYIYSPFIFCHRTANSCVAVCSL 87

Query: 182 *VQNQNLFIIMH 217
                +L +++H
Sbjct: 88  FTCLHSLVLLLH 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,102
Number of Sequences: 27780
Number of extensions: 231151
Number of successful extensions: 397
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)