Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0454.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I470 Cluster: 4-diphosphocytidyl-2c-methyl-D-erythrit...    33   6.0  
UniRef50_Q3U134 Cluster: Activated spleen cDNA, RIKEN full-lengt...    33   7.9  

>UniRef50_Q8I470 Cluster: 4-diphosphocytidyl-2c-methyl-D-erythritol
           kinase (CMK), putative; n=3; Plasmodium|Rep:
           4-diphosphocytidyl-2c-methyl-D-erythritol kinase (CMK),
           putative - Plasmodium falciparum (isolate 3D7)
          Length = 537

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 20/80 (25%), Positives = 42/80 (52%)
 Frame = -2

Query: 503 NSNSFYVNDLKTFLHSFIQRIQDLCFSKRLYKMHEVCVLNCFLFTNLFFIKNKQ*MFSDV 324
           N  + +VNDL+      I+++QDL    R   M +V  ++    ++LF + NK+    ++
Sbjct: 429 NLQNVFVNDLEHSAFYLIKKLQDLKEYLRSQNMFDVVSMS-GSGSSLFALSNKKTQTHEI 487

Query: 323 FRRRKNNKLKKYIPNVLLSY 264
               +N ++KK I ++ + +
Sbjct: 488 SSSFQNERIKKLISDIKIKF 507


>UniRef50_Q3U134 Cluster: Activated spleen cDNA, RIKEN full-length
           enriched library, clone:F830016D02 product:hypothetical
           protein, full insert sequence; n=2; Mus musculus|Rep:
           Activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830016D02 product:hypothetical protein,
           full insert sequence - Mus musculus (Mouse)
          Length = 121

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 517 VTSLKI-LIVFT*MI*KHFYIHSFREFKIYVSLNVCIRCTKYVS*IVFFLLICFSLKISS 341
           +T  K+ L  F+  I  + Y H+     IY+ + VC+ C KY+  I+  L++  +  +  
Sbjct: 38  ITMAKMGLYNFSSFISAYIYTHTHTHTYIYIYIYVCV-CVKYILTIIILLIMIINYSVKI 96

Query: 340 KC 335
            C
Sbjct: 97  HC 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 520,854,354
Number of Sequences: 1657284
Number of extensions: 9442198
Number of successful extensions: 17094
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17086
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)