Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0454.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.58 
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    25   7.1  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -2

Query: 398  VCVLNCFLFTNLFFIKNKQ*MFSDVFRRRKNNKLKKYIPNVL-----LSYKTTHLILNAL 234
            VCVL   +  NL+    +  + +D F R+ NN    Y  ++L     L +   +L+LNA+
Sbjct: 901  VCVLLAQIDCNLWIRNGRSILLTDAFYRQLNNIEVSYDKDILAIQTILMFVDPNLVLNAV 960

Query: 233  TQ 228
             Q
Sbjct: 961  VQ 962


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 319 RNTSENIYCLFLMKNKLVKRKQ---FKTHTSCI 408
           RN  + +  LFL+KN LV + Q   F  H +CI
Sbjct: 544 RNNDKQLARLFLIKNFLVLKDQLNSFDIHYACI 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,313
Number of Sequences: 5004
Number of extensions: 46746
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)