Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0454.Seq
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 300 LVIFSSSKYV*EHLLL 347
           L++F+ +KYV EHLL+
Sbjct: 151 LIMFTVNKYVGEHLLM 166


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 11  DKQKGQITIIIRTI*LGVALFNLEIKTVILNISGL 115
           DKQ+  +T++++ I      F  ++KT  LNIS +
Sbjct: 759 DKQETGVTLVVQEISSDGLKFAFDVKTT-LNISDI 792


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 497 NSFYVNDLKTFLHSFIQR 444
           ++F+ ND  +FLH   +R
Sbjct: 120 DTFFANDKNSFLHDVTER 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,906
Number of Sequences: 438
Number of extensions: 3472
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)