Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0453.Seq
         (299 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      27   0.057
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      27   0.057
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   0.93 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   0.93 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   1.2  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   2.2  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   2.9  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   2.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   3.8  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    20   5.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    20   5.0  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   6.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.6  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        19   8.7  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 26.6 bits (56), Expect = 0.057
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 278 REAVTWGVGHHRVPRETSRLLRHCAHQGLHGTHLRHEV 165
           RE +TW    H   R  +R  R C H    GT +R  +
Sbjct: 593 REQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 630


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 26.6 bits (56), Expect = 0.057
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 278 REAVTWGVGHHRVPRETSRLLRHCAHQGLHGTHLRHEV 165
           RE +TW    H   R  +R  R C H    GT +R  +
Sbjct: 485 REQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 522


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 0.93
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -1

Query: 200 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 93
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 379 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 414


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 0.93
 Identities = 11/36 (30%), Positives = 14/36 (38%)
 Frame = -1

Query: 200 QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPP 93
           QG  G H  +      ++  G E  HL     GH P
Sbjct: 327 QGYQGEHPNYNHYGYHYSGDGGEVAHLPNTHMGHEP 362


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 110 RQGHPPHHRRG 78
           RQG PPHH  G
Sbjct: 57  RQGIPPHHYGG 67



 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 137 HEGVHLAAARQGHPPHHRRGAGQAHRSQG 51
           H G H+   ++ HP HH+    Q H   G
Sbjct: 166 HMGHHM---QEQHPQHHQPHHQQQHMMYG 191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 2.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 137 HEGVHLAAARQGHPPHHRRGAGQAHRSQG 51
           H G H+   ++ HP HH+    Q H   G
Sbjct: 168 HMGHHM---QEQHPQHHQPHHQQQHMMYG 193


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 218 GAGMSLAGHDGAPRPKLRP 274
           G G  LA   GAP P   P
Sbjct: 33  GGGFWLAAASGAPHPAALP 51


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 218 GAGMSLAGHDGAPRPKLRP 274
           G G  LA   GAP P   P
Sbjct: 33  GGGFWLAAASGAPHPAALP 51


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 3.8
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -3

Query: 282  ITGGRNLGRGAPSCPARDIPAPSTLCTSRTPRDTPSPR 169
            +T  R         P R+  +P++   S TPR T   R
Sbjct: 916  LTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDR 953


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 245 DGAPRPKLRPP 277
           DGA  P +RPP
Sbjct: 65  DGASTPDVRPP 75


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 5.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 245 DGAPRPKLRPP 277
           DGA  P +RPP
Sbjct: 221 DGASTPDVRPP 231


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 252 PHAPSYGLP*SY 287
           PH P+Y  P SY
Sbjct: 22  PHNPAYSPPPSY 33


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.8 bits (39), Expect = 6.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 243 CPARDIPAPS 214
           CPA+  P+PS
Sbjct: 254 CPAQGFPSPS 263


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.4 bits (38), Expect = 8.7
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 210 MSKEPGCLSRDTMVPHAPS 266
           +  EPG L R     H PS
Sbjct: 344 LDSEPGMLKRKRQKYHDPS 362


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,218
Number of Sequences: 336
Number of extensions: 1572
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  5429307
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)