Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0453.Seq
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    96   1e-21
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    95   2e-21
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    95   2e-21
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    30   0.084
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.11 
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   1.8  
SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein homolog|S...    25   3.1  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    23   7.3  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    23   7.3  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    23   7.3  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    23   9.6  
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    23   9.6  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    23   9.6  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    23   9.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    23   9.6  

>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 95.9 bits (228), Expect = 1e-21
 Identities = 42/71 (59%), Positives = 57/71 (80%)
 Frame = -2

Query: 265 LGAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 86
           +G  GTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSI 248

Query: 85  AEERDKRIAAK 53
            EERD+R A K
Sbjct: 249 TEERDRRRALK 259



 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 285 MITGGRNLGR 256
           M+TGGRN+GR
Sbjct: 182 MVTGGRNMGR 191


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 95.1 bits (226), Expect = 2e-21
 Identities = 42/71 (59%), Positives = 57/71 (80%)
 Frame = -2

Query: 265 LGAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 86
           +G  GTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248

Query: 85  AEERDKRIAAK 53
            EERD+R A K
Sbjct: 249 TEERDRRRALK 259



 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 285 MITGGRNLGR 256
           M+TGGRN+GR
Sbjct: 182 MVTGGRNMGR 191


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 95.1 bits (226), Expect = 2e-21
 Identities = 42/71 (59%), Positives = 57/71 (80%)
 Frame = -2

Query: 265 LGAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 86
           +G  GTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++ISLP+GKG++L+I
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSI 248

Query: 85  AEERDKRIAAK 53
            EERD+R A K
Sbjct: 249 TEERDRRRALK 259



 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = -3

Query: 285 MITGGRNLGR 256
           M+TGGRN+GR
Sbjct: 182 MVTGGRNMGR 191


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.9 bits (64), Expect = 0.084
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 273 GRNLGRGAPSCPARDIPAPSTLCTSRTPRDTPSP 172
           G N+G  +   P   IP   T   +  P DTP+P
Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 29.5 bits (63), Expect = 0.11
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +2

Query: 122  DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD 247
            + RLR+L +     Y  V+ P  EG     LD+H+   A ++L GH+
Sbjct: 887  EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHE 933


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 256 WGTIVSRERHPGSFDIVHIKDSTGHTFATRLNN 158
           +G I  RE+ P  + I H   STG T+    N+
Sbjct: 54  FGVISYREKFPMDYHIWHTAPSTGKTYLQPWND 86


>SPCC24B10.18 |||human Leydig cell tumor 10 kDa protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 93

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 214 RRSRDVSRGTRWCPTPQVTASRDHT 288
           + S++  +G R+C   +  A +DHT
Sbjct: 22  KHSKNPKKGARYCAPRRAAAIKDHT 46


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 128 RLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAPRPKLRPPV 280
           RL  +AD +   + RG+G+ +  +      G+G  L  +D   R  +  P+
Sbjct: 284 RLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVHRVIMNVPL 334


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 161 VQPRGEGVSRG--VLDVHNVEGAGMSLAGHDGAPRPKLRPPVIIHK 292
           V+P+G G S     + +H+  G G+  +  D   R K  P   IH+
Sbjct: 96  VEPKGVGSSMDNHAITIHHSTGNGLLRSSFDHDYRQKNSPRNSIHR 141


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 255 GAPSCPARDIPAPS 214
           G PSC  +DIP P+
Sbjct: 324 GRPSCSRQDIPIPA 337


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 295 ELVYDHGRP*LGAWGTIVSRERHPGSFDI 209
           + VY H  P  G WG +V   ++     I
Sbjct: 72  DYVYVHQGPLKGKWGRVVETNKYTNGITI 100


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 108 PRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEPGCLSRDTMVPH 257
           P GSE  + +PL +++T      K+ P      +   +   L R   VPH
Sbjct: 135 PNGSESSSPIPLSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPH 184


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 180 VCPVESLMCTMSKEPGCLSRDTMVPHAPSYGLP*SY 287
           V   + L  T+ K PG    D  V     +GLP  Y
Sbjct: 293 VAATDLLALTILKSPGEWGADVAVGSTQRFGLPMGY 328


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 248 HRVPRETSRLLRHCAHQGLH 189
           H + RE  R   H  HQG H
Sbjct: 277 HTLGRELKRFASHDPHQGWH 296


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 183 CPVESLMCTMSKEPGCLSRD 242
           C  E   C  SK+P C S++
Sbjct: 240 CSQEKKSCCSSKKPSCCSQE 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,215,213
Number of Sequences: 5004
Number of extensions: 23027
Number of successful extensions: 80
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)