Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0453.Seq
(299 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 2e-26
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.2
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 1.2
SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 27 2.1
SB_34319| Best HMM Match : C2 (HMM E-Value=0.003) 27 2.1
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15) 27 2.1
SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12) 27 2.8
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 27 3.7
SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4) 27 3.7
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0) 27 3.7
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 27 3.7
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14) 26 4.9
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_7143| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06) 26 4.9
SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027) 26 6.5
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09) 26 6.5
SB_22185| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 26 6.5
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_58687| Best HMM Match : Crp (HMM E-Value=6.7) 25 8.6
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8) 25 8.6
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 25 8.6
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0) 25 8.6
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 25 8.6
SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19) 25 8.6
SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_59002| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66) 25 8.6
SB_49945| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_47270| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9) 25 8.6
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 113 bits (273), Expect = 2e-26
Identities = 48/71 (67%), Positives = 60/71 (84%)
Frame = -2
Query: 265 LGAWGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTI 86
+G G + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+RL+I
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGVRLSI 672
Query: 85 AEERDKRIAAK 53
AEERD+RIA K
Sbjct: 673 AEERDRRIAEK 683
>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 164 EQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 72
+Q H+ G+ H GH HHRR +G
Sbjct: 41 DQSAHHDSGYYSSHQNDYHHGHKRHHRRSSG 71
>SB_48477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 163 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 50
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 370 NGIIITGMDTIHQNVTDLPRFQGVSFTIAKETDERTAKDI 409
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 0.92
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -2
Query: 163 NNVFIIGKGT--KAYISLPRGKGIRLTIAEERDKRIAAKV 50
N + I G T + LPR +G+ TIA+E D+R A +
Sbjct: 506 NGIIITGMDTIHQNVADLPRFQGVSFTIAKETDERTAKDI 545
>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -1
Query: 158 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 60
+VHN +G EGV +R GH H RG+ HR
Sbjct: 197 QVHNERGSPSTQREGVTKYTSRGGHQVHTERGSPSTHR 234
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -1
Query: 158 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 60
+VHN +G EGV R GH H++RG+ R
Sbjct: 30 KVHNERGSPSTHREGVTRYTTRGGHQVHNQRGSPSTQR 67
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Frame = -1
Query: 158 RVHNRQG-----HEGVHLAAARQGHPPHHRRGAGQAHR 60
+VHN +G EGV R GH H+ RG+ R
Sbjct: 172 QVHNERGSPSTQREGVTKYTTRGGHQVHNERGSPSTQR 209
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -1
Query: 131 GVHLAAARQGHPPHHRRGAGQAHRSQG 51
GVH +G P + RG Q H +G
Sbjct: 152 GVHQVHIERGSPKYTTRGGHQVHNERG 178
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = -1
Query: 251 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 81
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_31307| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 185 THLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 57
THL E + + R+ G +AAA + P + R G +RS
Sbjct: 231 THLPEEKPKEISPRRAKGGAGMAAANKRQQPSNTRVIGAPYRS 273
>SB_25672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 63 MRLSRSSAMVRRMPLPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKEP 224
+ LSR + R+P P ++ +P P T + + +CPV + TMS P
Sbjct: 48 LSLSRFPCPLSRIPCP-----FSRIPCPFSRTPYTVFIILCPVSFIPYTMSLFP 96
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -1
Query: 215 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 87
+H H+ HGTH +H V + H + V H HH
Sbjct: 137 QHVTHKEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 180
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = -1
Query: 215 RHCAHQGLHGTHLRHEVE-QRVHNRQGHEGVHLAAARQGHPPHH 87
+H ++ HGTH +H V + H + V H HH
Sbjct: 165 QHVTYEEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHH 208
>SB_34319| Best HMM Match : C2 (HMM E-Value=0.003)
Length = 557
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 226 DVSRGTRWCPTPQVTASRD 282
DV+R WCP P V A+ D
Sbjct: 84 DVARSMGWCPPPGVEATED 102
>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
Length = 582
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -3
Query: 270 RNLGRGAPSCPARDIPA---PSTLCTSRTPRDTPSPR 169
RN SC RD P+ P SR PRD+PS R
Sbjct: 168 RNPRDSPSSCNVRDSPSSRNPRDSPASRNPRDSPSSR 204
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 267 NLGRGAPSCPARDIPAPSTLCTSRTPRDTPSPR 169
NL SC RD P+ SR PRD+P+ R
Sbjct: 142 NLRESPTSCNVRDSPS------SRNPRDSPASR 168
>SB_24471| Best HMM Match : Lectin_C (HMM E-Value=2.7e-12)
Length = 695
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 37 PTARRPWLRCACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRR 180
P P R +CP G C A +C+P C CR+ + + RR
Sbjct: 642 PQTANPMQRQSCP------GACASSCAPKCSPGC-CRILSATGQNRRR 682
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 176 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 45
RH + + NRQ H+ RQ H HRR + HR + +R
Sbjct: 160 RHRQKHQRRNRQKHQ----RRQRQEHQRRHRRQHQRRHRQKHQR 199
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -1
Query: 176 RHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 36
+H + ++VHN++GH G + +G QA + + R +G
Sbjct: 880 KHHIIRQVHNKEGHMGPTQVLSSVREKYWILKGGAQAKQEEFGRIIG 926
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 288 CMITGGRNLGRGAPSCPARDIPAPSTLCT 202
C T G+ G CPA+D A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450
>SB_31575| Best HMM Match : Metallothionein (HMM E-Value=9.4)
Length = 145
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 161 QRVHNRQGHEGVHLAAARQGHPPHHR----RGAGQAHRSQGRRAV 39
+R RQG G H ARQG +R +G HR++ R+ +
Sbjct: 69 ERCRTRQGVTGCHRTRARQGMTGCYRTRAPKGMTGCHRTRARKGM 113
>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
Length = 729
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 258 RGAPSCPARDIPAPSTLCTSRTPRDTPSPRG 166
RGAPS A+ PS+ T+ T R T PRG
Sbjct: 41 RGAPS--AKPPATPSSSKTTSTARSTVKPRG 69
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = -1
Query: 191 HGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHR 60
H H RH H+ Q H H R H HH + HR
Sbjct: 311 HHHHHRHHHHHHHHHHQRHR--HRHRHRHRHHHHHHHEYNRRHR 352
>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
Length = 498
Score = 26.2 bits (55), Expect = 4.9
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -2
Query: 223 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRI 62
GSF +V + + TFAT ++NV + T A ISLP LT + RI
Sbjct: 264 GSFTVVQLPNVRNATFATEIDNVPNGAQETIA-ISLPIDNTTGLTASRGYTIRI 316
>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 226 PGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKA--YISLPRGKGIRLTIAEE 77
P S ++ ++ T + RL VF++GK A + P+G+ + L I ++
Sbjct: 65 PASLPVLLLRSHTSGQYTFRLAVVFVLGKPAVAREEVLRPQGRHVYLDILDK 116
>SB_7143| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = -1
Query: 182 HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRR 45
H +H+ E H R A R+ P H+R ++Q +R
Sbjct: 24 HAQHKCEPSKHKRSTGVNRQTQAQRKCEPSEHKRSTSVNRQTQAQR 69
>SB_41913| Best HMM Match : Rap_GAP (HMM E-Value=1.9e-06)
Length = 1035
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 93 RRMPLPRGSEMYAFVPLPI-MNTLFNLVA 176
R +P+ G ++YAF P+P+ T NL++
Sbjct: 456 RTIPMKIGRQVYAFFPVPVSFATCINLLS 484
>SB_29141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1331
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -1
Query: 206 AHQGLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 48
A+ G+ H H + E ++N Q + + G G AHRSQG+
Sbjct: 470 AYHGMGNVHFNHGKYEDALNNYQHALSLFQKTGDESGQGDAYLGMGDAHRSQGK 523
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -1
Query: 248 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 84
H + + + H +H LH TH+ E + R G G R PH+R
Sbjct: 22 HTLSNQGHTHVLHSSHNSLHNTHMEEEGCRGGMGRVGRRG--RKGHRNHKEPHNR 74
>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1065
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = -1
Query: 182 HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQ 69
H +HE +R H R G+ H + P + R G+
Sbjct: 953 HRKHEERERHHGRHGNSKKHRKHDEEDEPENERDFFGE 990
>SB_39346| Best HMM Match : Drf_FH1 (HMM E-Value=0.027)
Length = 345
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 118 ARCTPSCPCRL*TRCSTSWRRCVP 189
A CTP+ P R SWR+ VP
Sbjct: 135 ATCTPATPWRQLVPLPPSWRQLVP 158
>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/38 (28%), Positives = 12/38 (31%)
Frame = +1
Query: 100 CPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQC 213
C C C CPC C C P+ C C
Sbjct: 230 CRCSVCTCCPCDCPCLQCAPCIVFSALCCPFWSLCLLC 267
>SB_22282| Best HMM Match : 7tm_2 (HMM E-Value=9.5e-09)
Length = 712
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +1
Query: 118 ARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQCRRSRDVSRGTRWCPTPQVTASR 279
AR +PS C CS+ C + P C R + GTR C + SR
Sbjct: 76 ARPSPS-KCYCDDLCSSLGDCCYDYIPRCENATEWRKLGPGTRTCVDGVIAISR 128
>SB_22185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -2
Query: 202 IKDSTGHTFATRLNNVFIIGKGTKAYIS 119
++D + ++ +F +GKGT+A++S
Sbjct: 6 LEDVMAIRYGNKIRELFCVGKGTQAFLS 33
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 25.8 bits (54), Expect = 6.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = -2
Query: 202 IKDSTGHTFATRLNNVFIIGKGTKAYIS 119
++D + ++ +F +GKGT+A++S
Sbjct: 595 LEDVMAIRYGNKIRELFCVGKGTQAFLS 622
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 243 CPARDIPAPSTLCTSRTPRDTP 178
CPA P P L S TP TP
Sbjct: 2426 CPACQTPKPKALQPSNTPFSTP 2447
>SB_58687| Best HMM Match : Crp (HMM E-Value=6.7)
Length = 70
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 132 FVPLPIMNTLFNLVAKVCPV 191
F+PLP+ + L +VA VC V
Sbjct: 35 FLPLPLRSALSKMVAVVCKV 54
>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
Length = 293
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Frame = +1
Query: 34 NPTARRPWLRCACPAPRRW*GGCPCRAA--ARCTPSCPCRL 150
+PT + C P P + CPC A + CPC +
Sbjct: 45 DPTQQGNQCPCVMPGPTQQGKQCPCNMAEPTQQGKQCPCNM 85
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 203 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAAR 108
H+ HG L ++V+ ++HNR G +A+
Sbjct: 781 HKQAHGKLLGYKVQYQIHNRSASLGTSNGSAQ 812
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -3
Query: 225 PAPSTLCTSRTPRDTPSP 172
PAPST+ T TP PSP
Sbjct: 180 PAPSTIPTPPTPPAPPSP 197
>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 4833
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 162 FNLVAKVCPVESLMCTMSKEPGCLSRDT 245
F+L CP S +C ++K+P L R+T
Sbjct: 173 FSLGTTACPTGSTLCVITKKP--LDRET 198
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +1
Query: 97 GCPCRAAARCTPSC 138
GCP A CTP+C
Sbjct: 446 GCPSMCAPSCTPAC 459
>SB_15441| Best HMM Match : RVT_1 (HMM E-Value=1e-19)
Length = 674
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 102 PLPRGSEMYAFVPLPIMNTLFNLVAKVC 185
PLPR F+PLP+ + L N+ A +C
Sbjct: 94 PLPRAF----FLPLPLRSALSNMAAGLC 117
>SB_12390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 868
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +2
Query: 161 VQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAP--RPKLRP 274
+ P E V R ++H G G SL G P RP++RP
Sbjct: 154 LNPVSEKVER---NLHKASGGGPSLGAPGGRPRIRPEIRP 190
>SB_59002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 161 VQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAPRPKLRPP 277
V P GVS+ L+ H G G++L G +G +PP
Sbjct: 129 VSPGLPGVSQVDLEGHRPGGPGVNLPGKEGHKLLGSKPP 167
>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
Length = 1709
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 113 ARQGHPPHHRRGAGQAHRSQGRRAVGLRTIN 21
+++ HPP +G G+A + +GLR+++
Sbjct: 1594 SQKAHPPQETQGVGRAVQDVTDNRLGLRSLS 1624
>SB_49945| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 493
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 291 LCMITGGRNLGRGAPSCPARDIPAP 217
L +T R+L RG P +RD+P P
Sbjct: 96 LIQLTQVRHLFRGTPRHQSRDVPLP 120
>SB_47270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 134 EGVHLAAARQGHPPHHRRGAGQAHRSQGRRAVG 36
EG H+ R+ R G GQ+ R + R+A G
Sbjct: 247 EGTHIPERRRQVGRQGRHGEGQSSRKEERQAKG 279
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +1
Query: 97 GCPCRAAARCTPSCPCRL*TRCSTSWRRC 183
GCP + C P CP + CS + C
Sbjct: 1345 GCPAVCSESCKPDCPIKC---CSNALSSC 1370
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = +1
Query: 100 CPCRAAARCTPSCPCRL*TRCSTS 171
CP C P CP + T+ S+S
Sbjct: 1553 CPVYCLTSCKPDCPIKCCTKLSSS 1576
>SB_27224| Best HMM Match : RNase_P_p30 (HMM E-Value=5.9)
Length = 489
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 191 HGTHLRHEVEQRVHNRQGHEGVHLAAARQG 102
HG HL V + +H H+G+HL R+G
Sbjct: 78 HGLHLL-TVRKGLHLLTVHKGLHLLTVRKG 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,898
Number of Sequences: 59808
Number of extensions: 241366
Number of successful extensions: 1046
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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